Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-154]:
1jova_PU0_1-154
CI=5.08


[155-247]:
1jova_PU0_155-247
CI=4.39


[248-269 ]:
1jova_PU0_248-269
CI=0.42


Level 1
PU
Molecule needs Java 1.4 Structure


[1-95]:
1jova_PU1_1-95
CI=4.62


[96-143]:
1jova_PU1_96-143
CI=3.75


[144-154]:
1jova_PU1_144-154
CI=0.00


[155-247]:
1jova_PU1_155-247
CI=4.39


[248-269 ]:
1jova_PU1_248-269
CI=0.42


Level 2
PU
Molecule needs Java 1.4 Structure


[1-73]:
1jova_PU2_1-73
CI=4.33


[74-95]:
1jova_PU2_74-95
CI=2.55


[96-143]:
1jova_PU2_96-143
CI=3.75


[144-154]:
1jova_PU2_144-154
CI=0.00


[155-247]:
1jova_PU2_155-247
CI=4.39


[248-269 ]:
1jova_PU2_248-269
CI=0.42


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU3_1-27
CI=3.17


[28-73]:
1jova_PU3_28-73
CI=3.34


[74-95]:
1jova_PU3_74-95
CI=2.55


[96-143]:
1jova_PU3_96-143
CI=3.75


[144-154]:
1jova_PU3_144-154
CI=0.00


[155-247]:
1jova_PU3_155-247
CI=4.39


[248-269 ]:
1jova_PU3_248-269
CI=0.42


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU4_1-27
CI=3.17


[28-73]:
1jova_PU4_28-73
CI=3.34


[74-95]:
1jova_PU4_74-95
CI=2.55


[96-143]:
1jova_PU4_96-143
CI=3.75


[144-154]:
1jova_PU4_144-154
CI=0.00


[155-226]:
1jova_PU4_155-226
CI=4.15


[227-247]:
1jova_PU4_227-247
CI=1.34


[248-269 ]:
1jova_PU4_248-269
CI=0.42


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU5_1-27
CI=3.17


[28-55]:
1jova_PU5_28-55
CI=2.98


[56-73]:
1jova_PU5_56-73
CI=1.25


[74-95]:
1jova_PU5_74-95
CI=2.55


[96-143]:
1jova_PU5_96-143
CI=3.75


[144-154]:
1jova_PU5_144-154
CI=0.00


[155-226]:
1jova_PU5_155-226
CI=4.15


[227-247]:
1jova_PU5_227-247
CI=1.34


[248-269 ]:
1jova_PU5_248-269
CI=0.42


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU6_1-27
CI=3.17


[28-55]:
1jova_PU6_28-55
CI=2.98


[56-73]:
1jova_PU6_56-73
CI=1.25


[74-95]:
1jova_PU6_74-95
CI=2.55


[96-143]:
1jova_PU6_96-143
CI=3.75


[144-154]:
1jova_PU6_144-154
CI=0.00


[155-195]:
1jova_PU6_155-195
CI=3.09


[196-226]:
1jova_PU6_196-226
CI=2.03


[227-247]:
1jova_PU6_227-247
CI=1.34


[248-269 ]:
1jova_PU6_248-269
CI=0.42


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU7_1-27
CI=3.17


[28-55]:
1jova_PU7_28-55
CI=2.98


[56-73]:
1jova_PU7_56-73
CI=1.25


[74-95]:
1jova_PU7_74-95
CI=2.55


[96-114]:
1jova_PU7_96-114
CI=2.57


[115-143]:
1jova_PU7_115-143
CI=2.04


[144-154]:
1jova_PU7_144-154
CI=0.00


[155-195]:
1jova_PU7_155-195
CI=3.09


[196-226]:
1jova_PU7_196-226
CI=2.03


[227-247]:
1jova_PU7_227-247
CI=1.34


[248-269 ]:
1jova_PU7_248-269
CI=0.42


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-27]:
1jova_PU_1-27
CI=3.17


[28-55]:
1jova_PU_28-55
CI=2.98


[56-73]:
1jova_PU_56-73
CI=1.25


[74-95]:
1jova_PU_74-95
CI=2.55


[96-114]:
1jova_PU_96-114
CI=2.57


[115-143]:
1jova_PU_115-143
CI=2.04


[144-154]:
1jova_PU_144-154
CI=0.00


[155-171]:
1jova_PU_155-171
CI=0.11


[172-195]:
1jova_PU_172-195
CI=0.95


[196-226]:
1jova_PU_196-226
CI=2.03


[227-247]:
1jova_PU_227-247
CI=1.34


[248-269 ]:
1jova_PU_248-269
CI=0.42