Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-173]:
1jp4a_PU0_1-173
CI=4.10


[174-302 ]:
1jp4a_PU0_174-302
CI=4.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU1_1-23
CI=0.00


[24-45]:
1jp4a_PU1_24-45
CI=1.72


[46-173]:
1jp4a_PU1_46-173
CI=3.49


[174-302 ]:
1jp4a_PU1_174-302
CI=4.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU2_1-23
CI=0.00


[24-45]:
1jp4a_PU2_24-45
CI=1.72


[46-112]:
1jp4a_PU2_46-112
CI=2.03


[113-173]:
1jp4a_PU2_113-173
CI=3.81


[174-302 ]:
1jp4a_PU2_174-302
CI=4.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU3_1-23
CI=0.00


[24-45]:
1jp4a_PU3_24-45
CI=1.72


[46-71]:
1jp4a_PU3_46-71
CI=0.50


[72-101]:
1jp4a_PU3_72-101
CI=0.00


[102-112]:
1jp4a_PU3_102-112
CI=0.00


[113-173]:
1jp4a_PU3_113-173
CI=3.81


[174-302 ]:
1jp4a_PU3_174-302
CI=4.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU4_1-23
CI=0.00


[24-45]:
1jp4a_PU4_24-45
CI=1.72


[46-71]:
1jp4a_PU4_46-71
CI=0.50


[72-101]:
1jp4a_PU4_72-101
CI=0.00


[102-112]:
1jp4a_PU4_102-112
CI=0.00


[113-173]:
1jp4a_PU4_113-173
CI=3.81


[174-232]:
1jp4a_PU4_174-232
CI=3.35


[233-302 ]:
1jp4a_PU4_233-302
CI=2.83


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU5_1-23
CI=0.00


[24-45]:
1jp4a_PU5_24-45
CI=1.72


[46-71]:
1jp4a_PU5_46-71
CI=0.50


[72-101]:
1jp4a_PU5_72-101
CI=0.00


[102-112]:
1jp4a_PU5_102-112
CI=0.00


[113-173]:
1jp4a_PU5_113-173
CI=3.81


[174-190]:
1jp4a_PU5_174-190
CI=0.11


[191-206]:
1jp4a_PU5_191-206
CI=0.00


[207-232]:
1jp4a_PU5_207-232
CI=0.64


[233-302 ]:
1jp4a_PU5_233-302
CI=2.83


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU6_1-23
CI=0.00


[24-45]:
1jp4a_PU6_24-45
CI=1.72


[46-71]:
1jp4a_PU6_46-71
CI=0.50


[72-101]:
1jp4a_PU6_72-101
CI=0.00


[102-112]:
1jp4a_PU6_102-112
CI=0.00


[113-173]:
1jp4a_PU6_113-173
CI=3.81


[174-190]:
1jp4a_PU6_174-190
CI=0.11


[191-206]:
1jp4a_PU6_191-206
CI=0.00


[207-232]:
1jp4a_PU6_207-232
CI=0.64


[233-283]:
1jp4a_PU6_233-283
CI=3.00


[284-302 ]:
1jp4a_PU6_284-302
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU7_1-23
CI=0.00


[24-45]:
1jp4a_PU7_24-45
CI=1.72


[46-71]:
1jp4a_PU7_46-71
CI=0.50


[72-101]:
1jp4a_PU7_72-101
CI=0.00


[102-112]:
1jp4a_PU7_102-112
CI=0.00


[113-146]:
1jp4a_PU7_113-146
CI=2.76


[147-173]:
1jp4a_PU7_147-173
CI=2.45


[174-190]:
1jp4a_PU7_174-190
CI=0.11


[191-206]:
1jp4a_PU7_191-206
CI=0.00


[207-232]:
1jp4a_PU7_207-232
CI=0.64


[233-283]:
1jp4a_PU7_233-283
CI=3.00


[284-302 ]:
1jp4a_PU7_284-302
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1jp4a_PU_1-23
CI=0.00


[24-45]:
1jp4a_PU_24-45
CI=1.72


[46-71]:
1jp4a_PU_46-71
CI=0.50


[72-101]:
1jp4a_PU_72-101
CI=0.00


[102-112]:
1jp4a_PU_102-112
CI=0.00


[113-146]:
1jp4a_PU_113-146
CI=2.76


[147-173]:
1jp4a_PU_147-173
CI=2.45


[174-190]:
1jp4a_PU_174-190
CI=0.11


[191-206]:
1jp4a_PU_191-206
CI=0.00


[207-232]:
1jp4a_PU_207-232
CI=0.64


[233-254]:
1jp4a_PU_233-254
CI=0.00


[255-283]:
1jp4a_PU_255-283
CI=1.95


[284-302 ]:
1jp4a_PU_284-302
CI=0.00