Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU0_1-23
CI=0.08


[24-157]:
1jqea_PU0_24-157
CI=3.80


[158-280 ]:
1jqea_PU0_158-280
CI=3.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU1_1-23
CI=0.08


[24-157]:
1jqea_PU1_24-157
CI=3.80


[158-213]:
1jqea_PU1_158-213
CI=1.05


[214-252]:
1jqea_PU1_214-252
CI=1.65


[253-280 ]:
1jqea_PU1_253-280
CI=1.02


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU2_1-23
CI=0.08


[24-106]:
1jqea_PU2_24-106
CI=3.64


[107-157]:
1jqea_PU2_107-157
CI=1.83


[158-213]:
1jqea_PU2_158-213
CI=1.05


[214-252]:
1jqea_PU2_214-252
CI=1.65


[253-280 ]:
1jqea_PU2_253-280
CI=1.02


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU3_1-23
CI=0.08


[24-106]:
1jqea_PU3_24-106
CI=3.64


[107-157]:
1jqea_PU3_107-157
CI=1.83


[158-191]:
1jqea_PU3_158-191
CI=1.33


[192-213]:
1jqea_PU3_192-213
CI=0.33


[214-252]:
1jqea_PU3_214-252
CI=1.65


[253-280 ]:
1jqea_PU3_253-280
CI=1.02


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU4_1-23
CI=0.08


[24-106]:
1jqea_PU4_24-106
CI=3.64


[107-157]:
1jqea_PU4_107-157
CI=1.83


[158-191]:
1jqea_PU4_158-191
CI=1.33


[192-213]:
1jqea_PU4_192-213
CI=0.33


[214-236]:
1jqea_PU4_214-236
CI=1.71


[237-252]:
1jqea_PU4_237-252
CI=0.22


[253-280 ]:
1jqea_PU4_253-280
CI=1.02


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU5_1-23
CI=0.08


[24-75]:
1jqea_PU5_24-75
CI=2.39


[76-106]:
1jqea_PU5_76-106
CI=1.10


[107-157]:
1jqea_PU5_107-157
CI=1.83


[158-191]:
1jqea_PU5_158-191
CI=1.33


[192-213]:
1jqea_PU5_192-213
CI=0.33


[214-236]:
1jqea_PU5_214-236
CI=1.71


[237-252]:
1jqea_PU5_237-252
CI=0.22


[253-280 ]:
1jqea_PU5_253-280
CI=1.02


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU6_1-23
CI=0.08


[24-75]:
1jqea_PU6_24-75
CI=2.39


[76-106]:
1jqea_PU6_76-106
CI=1.10


[107-129]:
1jqea_PU6_107-129
CI=0.16


[130-157]:
1jqea_PU6_130-157
CI=0.40


[158-191]:
1jqea_PU6_158-191
CI=1.33


[192-213]:
1jqea_PU6_192-213
CI=0.33


[214-236]:
1jqea_PU6_214-236
CI=1.71


[237-252]:
1jqea_PU6_237-252
CI=0.22


[253-280 ]:
1jqea_PU6_253-280
CI=1.02


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU7_1-23
CI=0.08


[24-75]:
1jqea_PU7_24-75
CI=2.39


[76-106]:
1jqea_PU7_76-106
CI=1.10


[107-129]:
1jqea_PU7_107-129
CI=0.16


[130-157]:
1jqea_PU7_130-157
CI=0.40


[158-174]:
1jqea_PU7_158-174
CI=0.31


[175-191]:
1jqea_PU7_175-191
CI=0.21


[192-213]:
1jqea_PU7_192-213
CI=0.33


[214-236]:
1jqea_PU7_214-236
CI=1.71


[237-252]:
1jqea_PU7_237-252
CI=0.22


[253-280 ]:
1jqea_PU7_253-280
CI=1.02


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1jqea_PU_1-23
CI=0.08


[24-46]:
1jqea_PU_24-46
CI=0.16


[47-75]:
1jqea_PU_47-75
CI=0.90


[76-106]:
1jqea_PU_76-106
CI=1.10


[107-129]:
1jqea_PU_107-129
CI=0.16


[130-157]:
1jqea_PU_130-157
CI=0.40


[158-174]:
1jqea_PU_158-174
CI=0.31


[175-191]:
1jqea_PU_175-191
CI=0.21


[192-213]:
1jqea_PU_192-213
CI=0.33


[214-236]:
1jqea_PU_214-236
CI=1.71


[237-252]:
1jqea_PU_237-252
CI=0.22


[253-280 ]:
1jqea_PU_253-280
CI=1.02