Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-178]:
1jr7a_PU0_1-178
CI=2.33


[179-246]:
1jr7a_PU0_179-246
CI=2.13


[247-306 ]:
1jr7a_PU0_247-306
CI=0.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-178]:
1jr7a_PU1_1-178
CI=2.33


[179-246]:
1jr7a_PU1_179-246
CI=2.13


[247-290]:
1jr7a_PU1_247-290
CI=0.25


[291-306 ]:
1jr7a_PU1_291-306
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-111]:
1jr7a_PU2_1-111
CI=2.96


[112-178]:
1jr7a_PU2_112-178
CI=0.85


[179-246]:
1jr7a_PU2_179-246
CI=2.13


[247-290]:
1jr7a_PU2_247-290
CI=0.25


[291-306 ]:
1jr7a_PU2_291-306
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-111]:
1jr7a_PU3_1-111
CI=2.96


[112-129]:
1jr7a_PU3_112-129
CI=1.14


[130-178]:
1jr7a_PU3_130-178
CI=0.65


[179-246]:
1jr7a_PU3_179-246
CI=2.13


[247-290]:
1jr7a_PU3_247-290
CI=0.25


[291-306 ]:
1jr7a_PU3_291-306
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-111]:
1jr7a_PU4_1-111
CI=2.96


[112-129]:
1jr7a_PU4_112-129
CI=1.14


[130-155]:
1jr7a_PU4_130-155
CI=0.71


[156-178]:
1jr7a_PU4_156-178
CI=0.00


[179-246]:
1jr7a_PU4_179-246
CI=2.13


[247-290]:
1jr7a_PU4_247-290
CI=0.25


[291-306 ]:
1jr7a_PU4_291-306
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-111]:
1jr7a_PU5_1-111
CI=2.96


[112-129]:
1jr7a_PU5_112-129
CI=1.14


[130-155]:
1jr7a_PU5_130-155
CI=0.71


[156-178]:
1jr7a_PU5_156-178
CI=0.00


[179-230]:
1jr7a_PU5_179-230
CI=2.42


[231-246]:
1jr7a_PU5_231-246
CI=0.23


[247-290]:
1jr7a_PU5_247-290
CI=0.25


[291-306 ]:
1jr7a_PU5_291-306
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jr7a_PU6_1-34
CI=2.42


[35-53]:
1jr7a_PU6_35-53
CI=0.58


[54-111]:
1jr7a_PU6_54-111
CI=1.22


[112-129]:
1jr7a_PU6_112-129
CI=1.14


[130-155]:
1jr7a_PU6_130-155
CI=0.71


[156-178]:
1jr7a_PU6_156-178
CI=0.00


[179-230]:
1jr7a_PU6_179-230
CI=2.42


[231-246]:
1jr7a_PU6_231-246
CI=0.23


[247-290]:
1jr7a_PU6_247-290
CI=0.25


[291-306 ]:
1jr7a_PU6_291-306
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jr7a_PU7_1-34
CI=2.42


[35-53]:
1jr7a_PU7_35-53
CI=0.58


[54-84]:
1jr7a_PU7_54-84
CI=0.91


[85-111]:
1jr7a_PU7_85-111
CI=0.28


[112-129]:
1jr7a_PU7_112-129
CI=1.14


[130-155]:
1jr7a_PU7_130-155
CI=0.71


[156-178]:
1jr7a_PU7_156-178
CI=0.00


[179-230]:
1jr7a_PU7_179-230
CI=2.42


[231-246]:
1jr7a_PU7_231-246
CI=0.23


[247-290]:
1jr7a_PU7_247-290
CI=0.25


[291-306 ]:
1jr7a_PU7_291-306
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jr7a_PU8_1-34
CI=2.42


[35-53]:
1jr7a_PU8_35-53
CI=0.58


[54-84]:
1jr7a_PU8_54-84
CI=0.91


[85-111]:
1jr7a_PU8_85-111
CI=0.28


[112-129]:
1jr7a_PU8_112-129
CI=1.14


[130-155]:
1jr7a_PU8_130-155
CI=0.71


[156-178]:
1jr7a_PU8_156-178
CI=0.00


[179-210]:
1jr7a_PU8_179-210
CI=1.62


[211-230]:
1jr7a_PU8_211-230
CI=1.41


[231-246]:
1jr7a_PU8_231-246
CI=0.23


[247-290]:
1jr7a_PU8_247-290
CI=0.25


[291-306 ]:
1jr7a_PU8_291-306
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-34]:
1jr7a_PU_1-34
CI=2.42


[35-53]:
1jr7a_PU_35-53
CI=0.58


[54-84]:
1jr7a_PU_54-84
CI=0.91


[85-111]:
1jr7a_PU_85-111
CI=0.28


[112-129]:
1jr7a_PU_112-129
CI=1.14


[130-155]:
1jr7a_PU_130-155
CI=0.71


[156-178]:
1jr7a_PU_156-178
CI=0.00


[179-210]:
1jr7a_PU_179-210
CI=1.62


[211-230]:
1jr7a_PU_211-230
CI=1.41


[231-246]:
1jr7a_PU_231-246
CI=0.23


[247-267]:
1jr7a_PU_247-267
CI=0.17


[268-290]:
1jr7a_PU_268-290
CI=0.00


[291-306 ]:
1jr7a_PU_291-306
CI=0.00