Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1jrra_PU0_1-84
CI=1.06


[85-160]:
1jrra_PU0_85-160
CI=2.87


[161-357 ]:
1jrra_PU0_161-357
CI=4.07


Level 1
PU
Molecule needs Java 1.4 Structure


[1-84]:
1jrra_PU1_1-84
CI=1.06


[85-160]:
1jrra_PU1_85-160
CI=2.87


[161-265]:
1jrra_PU1_161-265
CI=3.30


[266-308]:
1jrra_PU1_266-308
CI=2.22


[309-357 ]:
1jrra_PU1_309-357
CI=1.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-84]:
1jrra_PU2_1-84
CI=1.06


[85-160]:
1jrra_PU2_85-160
CI=2.87


[161-265]:
1jrra_PU2_161-265
CI=3.30


[266-308]:
1jrra_PU2_266-308
CI=2.22


[309-329]:
1jrra_PU2_309-329
CI=0.00


[330-357 ]:
1jrra_PU2_330-357
CI=2.17


Level 3
PU
Molecule needs Java 1.4 Structure


[1-60]:
1jrra_PU3_1-60
CI=0.95


[61-84]:
1jrra_PU3_61-84
CI=0.63


[85-160]:
1jrra_PU3_85-160
CI=2.87


[161-265]:
1jrra_PU3_161-265
CI=3.30


[266-308]:
1jrra_PU3_266-308
CI=2.22


[309-329]:
1jrra_PU3_309-329
CI=0.00


[330-357 ]:
1jrra_PU3_330-357
CI=2.17


Level 4
PU
Molecule needs Java 1.4 Structure


[1-60]:
1jrra_PU4_1-60
CI=0.95


[61-84]:
1jrra_PU4_61-84
CI=0.63


[85-160]:
1jrra_PU4_85-160
CI=2.87


[161-193]:
1jrra_PU4_161-193
CI=1.81


[194-257]:
1jrra_PU4_194-257
CI=2.87


[258-265]:
1jrra_PU4_258-265
CI=0.00


[266-308]:
1jrra_PU4_266-308
CI=2.22


[309-329]:
1jrra_PU4_309-329
CI=0.00


[330-357 ]:
1jrra_PU4_330-357
CI=2.17


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1jrra_PU5_1-36
CI=0.62


[37-60]:
1jrra_PU5_37-60
CI=0.46


[61-84]:
1jrra_PU5_61-84
CI=0.63


[85-160]:
1jrra_PU5_85-160
CI=2.87


[161-193]:
1jrra_PU5_161-193
CI=1.81


[194-257]:
1jrra_PU5_194-257
CI=2.87


[258-265]:
1jrra_PU5_258-265
CI=0.00


[266-308]:
1jrra_PU5_266-308
CI=2.22


[309-329]:
1jrra_PU5_309-329
CI=0.00


[330-357 ]:
1jrra_PU5_330-357
CI=2.17


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1jrra_PU6_1-36
CI=0.62


[37-60]:
1jrra_PU6_37-60
CI=0.46


[61-84]:
1jrra_PU6_61-84
CI=0.63


[85-116]:
1jrra_PU6_85-116
CI=2.25


[117-152]:
1jrra_PU6_117-152
CI=1.74


[153-160]:
1jrra_PU6_153-160
CI=0.00


[161-193]:
1jrra_PU6_161-193
CI=1.81


[194-257]:
1jrra_PU6_194-257
CI=2.87


[258-265]:
1jrra_PU6_258-265
CI=0.00


[266-308]:
1jrra_PU6_266-308
CI=2.22


[309-329]:
1jrra_PU6_309-329
CI=0.00


[330-357 ]:
1jrra_PU6_330-357
CI=2.17


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1jrra_PU7_1-36
CI=0.62


[37-60]:
1jrra_PU7_37-60
CI=0.46


[61-84]:
1jrra_PU7_61-84
CI=0.63


[85-116]:
1jrra_PU7_85-116
CI=2.25


[117-152]:
1jrra_PU7_117-152
CI=1.74


[153-160]:
1jrra_PU7_153-160
CI=0.00


[161-193]:
1jrra_PU7_161-193
CI=1.81


[194-257]:
1jrra_PU7_194-257
CI=2.87


[258-265]:
1jrra_PU7_258-265
CI=0.00


[266-282]:
1jrra_PU7_266-282
CI=0.10


[283-308]:
1jrra_PU7_283-308
CI=2.23


[309-329]:
1jrra_PU7_309-329
CI=0.00


[330-357 ]:
1jrra_PU7_330-357
CI=2.17


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jrra_PU8_1-17
CI=0.10


[18-36]:
1jrra_PU8_18-36
CI=0.10


[37-60]:
1jrra_PU8_37-60
CI=0.46


[61-84]:
1jrra_PU8_61-84
CI=0.63


[85-116]:
1jrra_PU8_85-116
CI=2.25


[117-152]:
1jrra_PU8_117-152
CI=1.74


[153-160]:
1jrra_PU8_153-160
CI=0.00


[161-193]:
1jrra_PU8_161-193
CI=1.81


[194-257]:
1jrra_PU8_194-257
CI=2.87


[258-265]:
1jrra_PU8_258-265
CI=0.00


[266-282]:
1jrra_PU8_266-282
CI=0.10


[283-308]:
1jrra_PU8_283-308
CI=2.23


[309-329]:
1jrra_PU8_309-329
CI=0.00


[330-357 ]:
1jrra_PU8_330-357
CI=2.17


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jrra_PU9_1-17
CI=0.10


[18-36]:
1jrra_PU9_18-36
CI=0.10


[37-60]:
1jrra_PU9_37-60
CI=0.46


[61-84]:
1jrra_PU9_61-84
CI=0.63


[85-116]:
1jrra_PU9_85-116
CI=2.25


[117-152]:
1jrra_PU9_117-152
CI=1.74


[153-160]:
1jrra_PU9_153-160
CI=0.00


[161-193]:
1jrra_PU9_161-193
CI=1.81


[194-239]:
1jrra_PU9_194-239
CI=2.72


[240-257]:
1jrra_PU9_240-257
CI=0.20


[258-265]:
1jrra_PU9_258-265
CI=0.00


[266-282]:
1jrra_PU9_266-282
CI=0.10


[283-308]:
1jrra_PU9_283-308
CI=2.23


[309-329]:
1jrra_PU9_309-329
CI=0.00


[330-357 ]:
1jrra_PU9_330-357
CI=2.17


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1jrra_PU10_1-17
CI=0.10


[18-36]:
1jrra_PU10_18-36
CI=0.10


[37-60]:
1jrra_PU10_37-60
CI=0.46


[61-84]:
1jrra_PU10_61-84
CI=0.63


[85-116]:
1jrra_PU10_85-116
CI=2.25


[117-152]:
1jrra_PU10_117-152
CI=1.74


[153-160]:
1jrra_PU10_153-160
CI=0.00


[161-193]:
1jrra_PU10_161-193
CI=1.81


[194-217]:
1jrra_PU10_194-217
CI=1.42


[218-239]:
1jrra_PU10_218-239
CI=0.34


[240-257]:
1jrra_PU10_240-257
CI=0.20


[258-265]:
1jrra_PU10_258-265
CI=0.00


[266-282]:
1jrra_PU10_266-282
CI=0.10


[283-308]:
1jrra_PU10_283-308
CI=2.23


[309-329]:
1jrra_PU10_309-329
CI=0.00


[330-357 ]:
1jrra_PU10_330-357
CI=2.17


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-17]:
1jrra_PU_1-17
CI=0.10


[18-36]:
1jrra_PU_18-36
CI=0.10


[37-60]:
1jrra_PU_37-60
CI=0.46


[61-84]:
1jrra_PU_61-84
CI=0.63


[85-116]:
1jrra_PU_85-116
CI=2.25


[117-133]:
1jrra_PU_117-133
CI=0.11


[134-152]:
1jrra_PU_134-152
CI=0.00


[153-160]:
1jrra_PU_153-160
CI=0.00


[161-193]:
1jrra_PU_161-193
CI=1.81


[194-217]:
1jrra_PU_194-217
CI=1.42


[218-239]:
1jrra_PU_218-239
CI=0.34


[240-257]:
1jrra_PU_240-257
CI=0.20


[258-265]:
1jrra_PU_258-265
CI=0.00


[266-282]:
1jrra_PU_266-282
CI=0.10


[283-308]:
1jrra_PU_283-308
CI=2.23


[309-329]:
1jrra_PU_309-329
CI=0.00


[330-357 ]:
1jrra_PU_330-357
CI=2.17