Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-161]:
1js1x_PU0_1-161
CI=3.32


[162-295]:
1js1x_PU0_162-295
CI=4.28


[296-324 ]:
1js1x_PU0_296-324
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-70]:
1js1x_PU1_1-70
CI=2.04


[71-96]:
1js1x_PU1_71-96
CI=1.65


[97-161]:
1js1x_PU1_97-161
CI=3.03


[162-295]:
1js1x_PU1_162-295
CI=4.28


[296-324 ]:
1js1x_PU1_296-324
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU2_1-27
CI=0.42


[28-70]:
1js1x_PU2_28-70
CI=2.94


[71-96]:
1js1x_PU2_71-96
CI=1.65


[97-161]:
1js1x_PU2_97-161
CI=3.03


[162-295]:
1js1x_PU2_162-295
CI=4.28


[296-324 ]:
1js1x_PU2_296-324
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU3_1-27
CI=0.42


[28-70]:
1js1x_PU3_28-70
CI=2.94


[71-96]:
1js1x_PU3_71-96
CI=1.65


[97-145]:
1js1x_PU3_97-145
CI=3.61


[146-161]:
1js1x_PU3_146-161
CI=0.00


[162-295]:
1js1x_PU3_162-295
CI=4.28


[296-324 ]:
1js1x_PU3_296-324
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU4_1-27
CI=0.42


[28-70]:
1js1x_PU4_28-70
CI=2.94


[71-96]:
1js1x_PU4_71-96
CI=1.65


[97-145]:
1js1x_PU4_97-145
CI=3.61


[146-161]:
1js1x_PU4_146-161
CI=0.00


[162-253]:
1js1x_PU4_162-253
CI=3.92


[254-295]:
1js1x_PU4_254-295
CI=1.73


[296-324 ]:
1js1x_PU4_296-324
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU5_1-27
CI=0.42


[28-70]:
1js1x_PU5_28-70
CI=2.94


[71-96]:
1js1x_PU5_71-96
CI=1.65


[97-145]:
1js1x_PU5_97-145
CI=3.61


[146-161]:
1js1x_PU5_146-161
CI=0.00


[162-253]:
1js1x_PU5_162-253
CI=3.92


[254-271]:
1js1x_PU5_254-271
CI=0.10


[272-295]:
1js1x_PU5_272-295
CI=0.71


[296-324 ]:
1js1x_PU5_296-324
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU6_1-27
CI=0.42


[28-70]:
1js1x_PU6_28-70
CI=2.94


[71-96]:
1js1x_PU6_71-96
CI=1.65


[97-145]:
1js1x_PU6_97-145
CI=3.61


[146-161]:
1js1x_PU6_146-161
CI=0.00


[162-181]:
1js1x_PU6_162-181
CI=0.00


[182-228]:
1js1x_PU6_182-228
CI=1.79


[229-253]:
1js1x_PU6_229-253
CI=0.99


[254-271]:
1js1x_PU6_254-271
CI=0.10


[272-295]:
1js1x_PU6_272-295
CI=0.71


[296-324 ]:
1js1x_PU6_296-324
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU7_1-27
CI=0.42


[28-70]:
1js1x_PU7_28-70
CI=2.94


[71-96]:
1js1x_PU7_71-96
CI=1.65


[97-145]:
1js1x_PU7_97-145
CI=3.61


[146-161]:
1js1x_PU7_146-161
CI=0.00


[162-181]:
1js1x_PU7_162-181
CI=0.00


[182-201]:
1js1x_PU7_182-201
CI=0.18


[202-228]:
1js1x_PU7_202-228
CI=1.05


[229-253]:
1js1x_PU7_229-253
CI=0.99


[254-271]:
1js1x_PU7_254-271
CI=0.10


[272-295]:
1js1x_PU7_272-295
CI=0.71


[296-324 ]:
1js1x_PU7_296-324
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU8_1-27
CI=0.42


[28-70]:
1js1x_PU8_28-70
CI=2.94


[71-96]:
1js1x_PU8_71-96
CI=1.65


[97-113]:
1js1x_PU8_97-113
CI=0.11


[114-145]:
1js1x_PU8_114-145
CI=1.48


[146-161]:
1js1x_PU8_146-161
CI=0.00


[162-181]:
1js1x_PU8_162-181
CI=0.00


[182-201]:
1js1x_PU8_182-201
CI=0.18


[202-228]:
1js1x_PU8_202-228
CI=1.05


[229-253]:
1js1x_PU8_229-253
CI=0.99


[254-271]:
1js1x_PU8_254-271
CI=0.10


[272-295]:
1js1x_PU8_272-295
CI=0.71


[296-324 ]:
1js1x_PU8_296-324
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-27]:
1js1x_PU_1-27
CI=0.42


[28-44]:
1js1x_PU_28-44
CI=0.00


[45-70]:
1js1x_PU_45-70
CI=0.42


[71-96]:
1js1x_PU_71-96
CI=1.65


[97-113]:
1js1x_PU_97-113
CI=0.11


[114-145]:
1js1x_PU_114-145
CI=1.48


[146-161]:
1js1x_PU_146-161
CI=0.00


[162-181]:
1js1x_PU_162-181
CI=0.00


[182-201]:
1js1x_PU_182-201
CI=0.18


[202-228]:
1js1x_PU_202-228
CI=1.05


[229-253]:
1js1x_PU_229-253
CI=0.99


[254-271]:
1js1x_PU_254-271
CI=0.10


[272-295]:
1js1x_PU_272-295
CI=0.71


[296-324 ]:
1js1x_PU_296-324
CI=0.00