Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU0_1-31
CI=1.76


[32-304]:
1jsdb_PU0_32-304
CI=5.62


[305-317 ]:
1jsdb_PU0_305-317
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU1_1-31
CI=1.76


[32-48]:
1jsdb_PU1_32-48
CI=0.11


[49-262]:
1jsdb_PU1_49-262
CI=5.48


[263-304]:
1jsdb_PU1_263-304
CI=3.36


[305-317 ]:
1jsdb_PU1_305-317
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU2_1-31
CI=1.76


[32-48]:
1jsdb_PU2_32-48
CI=0.11


[49-115]:
1jsdb_PU2_49-115
CI=2.79


[116-250]:
1jsdb_PU2_116-250
CI=5.06


[251-262]:
1jsdb_PU2_251-262
CI=0.00


[263-304]:
1jsdb_PU2_263-304
CI=3.36


[305-317 ]:
1jsdb_PU2_305-317
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU3_1-31
CI=1.76


[32-48]:
1jsdb_PU3_32-48
CI=0.11


[49-91]:
1jsdb_PU3_49-91
CI=3.20


[92-115]:
1jsdb_PU3_92-115
CI=0.07


[116-250]:
1jsdb_PU3_116-250
CI=5.06


[251-262]:
1jsdb_PU3_251-262
CI=0.00


[263-304]:
1jsdb_PU3_263-304
CI=3.36


[305-317 ]:
1jsdb_PU3_305-317
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU4_1-31
CI=1.76


[32-48]:
1jsdb_PU4_32-48
CI=0.11


[49-91]:
1jsdb_PU4_49-91
CI=3.20


[92-115]:
1jsdb_PU4_92-115
CI=0.07


[116-152]:
1jsdb_PU4_116-152
CI=2.10


[153-250]:
1jsdb_PU4_153-250
CI=4.72


[251-262]:
1jsdb_PU4_251-262
CI=0.00


[263-304]:
1jsdb_PU4_263-304
CI=3.36


[305-317 ]:
1jsdb_PU4_305-317
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU5_1-31
CI=1.76


[32-48]:
1jsdb_PU5_32-48
CI=0.11


[49-91]:
1jsdb_PU5_49-91
CI=3.20


[92-115]:
1jsdb_PU5_92-115
CI=0.07


[116-152]:
1jsdb_PU5_116-152
CI=2.10


[153-174]:
1jsdb_PU5_153-174
CI=0.08


[175-190]:
1jsdb_PU5_175-190
CI=0.80


[191-250]:
1jsdb_PU5_191-250
CI=1.89


[251-262]:
1jsdb_PU5_251-262
CI=0.00


[263-304]:
1jsdb_PU5_263-304
CI=3.36


[305-317 ]:
1jsdb_PU5_305-317
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU6_1-31
CI=1.76


[32-48]:
1jsdb_PU6_32-48
CI=0.11


[49-91]:
1jsdb_PU6_49-91
CI=3.20


[92-115]:
1jsdb_PU6_92-115
CI=0.07


[116-152]:
1jsdb_PU6_116-152
CI=2.10


[153-174]:
1jsdb_PU6_153-174
CI=0.08


[175-190]:
1jsdb_PU6_175-190
CI=0.80


[191-206]:
1jsdb_PU6_191-206
CI=1.97


[207-226]:
1jsdb_PU6_207-226
CI=0.92


[227-250]:
1jsdb_PU6_227-250
CI=0.08


[251-262]:
1jsdb_PU6_251-262
CI=0.00


[263-304]:
1jsdb_PU6_263-304
CI=3.36


[305-317 ]:
1jsdb_PU6_305-317
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-31]:
1jsdb_PU_1-31
CI=1.76


[32-48]:
1jsdb_PU_32-48
CI=0.11


[49-91]:
1jsdb_PU_49-91
CI=3.20


[92-115]:
1jsdb_PU_92-115
CI=0.07


[116-152]:
1jsdb_PU_116-152
CI=2.10


[153-174]:
1jsdb_PU_153-174
CI=0.08


[175-190]:
1jsdb_PU_175-190
CI=0.80


[191-206]:
1jsdb_PU_191-206
CI=1.97


[207-226]:
1jsdb_PU_207-226
CI=0.92


[227-250]:
1jsdb_PU_227-250
CI=0.08


[251-262]:
1jsdb_PU_251-262
CI=0.00


[263-280]:
1jsdb_PU_263-280
CI=1.44


[281-304]:
1jsdb_PU_281-304
CI=2.58


[305-317 ]:
1jsdb_PU_305-317
CI=0.00