Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jtgb_PU0_1-50
CI=1.53


[51-123]:
1jtgb_PU0_51-123
CI=2.52


[124-262 ]:
1jtgb_PU0_124-262
CI=3.31


Level 1
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jtgb_PU1_1-50
CI=1.53


[51-123]:
1jtgb_PU1_51-123
CI=2.52


[124-182]:
1jtgb_PU1_124-182
CI=1.62


[183-262 ]:
1jtgb_PU1_183-262
CI=3.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jtgb_PU2_1-50
CI=1.53


[51-123]:
1jtgb_PU2_51-123
CI=2.52


[124-164]:
1jtgb_PU2_124-164
CI=1.99


[165-182]:
1jtgb_PU2_165-182
CI=0.62


[183-262 ]:
1jtgb_PU2_183-262
CI=3.83


Level 3
PU
Molecule needs Java 1.4 Structure


[1-50]:
1jtgb_PU3_1-50
CI=1.53


[51-66]:
1jtgb_PU3_51-66
CI=0.35


[67-112]:
1jtgb_PU3_67-112
CI=2.56


[113-123]:
1jtgb_PU3_113-123
CI=0.80


[124-164]:
1jtgb_PU3_124-164
CI=1.99


[165-182]:
1jtgb_PU3_165-182
CI=0.62


[183-262 ]:
1jtgb_PU3_183-262
CI=3.83


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU4_1-34
CI=1.34


[35-50]:
1jtgb_PU4_35-50
CI=0.00


[51-66]:
1jtgb_PU4_51-66
CI=0.35


[67-112]:
1jtgb_PU4_67-112
CI=2.56


[113-123]:
1jtgb_PU4_113-123
CI=0.80


[124-164]:
1jtgb_PU4_124-164
CI=1.99


[165-182]:
1jtgb_PU4_165-182
CI=0.62


[183-262 ]:
1jtgb_PU4_183-262
CI=3.83


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU5_1-34
CI=1.34


[35-50]:
1jtgb_PU5_35-50
CI=0.00


[51-66]:
1jtgb_PU5_51-66
CI=0.35


[67-112]:
1jtgb_PU5_67-112
CI=2.56


[113-123]:
1jtgb_PU5_113-123
CI=0.80


[124-164]:
1jtgb_PU5_124-164
CI=1.99


[165-182]:
1jtgb_PU5_165-182
CI=0.62


[183-239]:
1jtgb_PU5_183-239
CI=4.12


[240-262 ]:
1jtgb_PU5_240-262
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU6_1-34
CI=1.34


[35-50]:
1jtgb_PU6_35-50
CI=0.00


[51-66]:
1jtgb_PU6_51-66
CI=0.35


[67-93]:
1jtgb_PU6_67-93
CI=1.20


[94-112]:
1jtgb_PU6_94-112
CI=1.25


[113-123]:
1jtgb_PU6_113-123
CI=0.80


[124-164]:
1jtgb_PU6_124-164
CI=1.99


[165-182]:
1jtgb_PU6_165-182
CI=0.62


[183-239]:
1jtgb_PU6_183-239
CI=4.12


[240-262 ]:
1jtgb_PU6_240-262
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU7_1-34
CI=1.34


[35-50]:
1jtgb_PU7_35-50
CI=0.00


[51-66]:
1jtgb_PU7_51-66
CI=0.35


[67-93]:
1jtgb_PU7_67-93
CI=1.20


[94-112]:
1jtgb_PU7_94-112
CI=1.25


[113-123]:
1jtgb_PU7_113-123
CI=0.80


[124-164]:
1jtgb_PU7_124-164
CI=1.99


[165-182]:
1jtgb_PU7_165-182
CI=0.62


[183-199]:
1jtgb_PU7_183-199
CI=0.00


[200-239]:
1jtgb_PU7_200-239
CI=4.46


[240-262 ]:
1jtgb_PU7_240-262
CI=0.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU8_1-34
CI=1.34


[35-50]:
1jtgb_PU8_35-50
CI=0.00


[51-66]:
1jtgb_PU8_51-66
CI=0.35


[67-93]:
1jtgb_PU8_67-93
CI=1.20


[94-112]:
1jtgb_PU8_94-112
CI=1.25


[113-123]:
1jtgb_PU8_113-123
CI=0.80


[124-140]:
1jtgb_PU8_124-140
CI=0.86


[141-164]:
1jtgb_PU8_141-164
CI=0.45


[165-182]:
1jtgb_PU8_165-182
CI=0.62


[183-199]:
1jtgb_PU8_183-199
CI=0.00


[200-239]:
1jtgb_PU8_200-239
CI=4.46


[240-262 ]:
1jtgb_PU8_240-262
CI=0.08


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-34]:
1jtgb_PU_1-34
CI=1.34


[35-50]:
1jtgb_PU_35-50
CI=0.00


[51-66]:
1jtgb_PU_51-66
CI=0.35


[67-93]:
1jtgb_PU_67-93
CI=1.20


[94-112]:
1jtgb_PU_94-112
CI=1.25


[113-123]:
1jtgb_PU_113-123
CI=0.80


[124-140]:
1jtgb_PU_124-140
CI=0.86


[141-164]:
1jtgb_PU_141-164
CI=0.45


[165-182]:
1jtgb_PU_165-182
CI=0.62


[183-199]:
1jtgb_PU_183-199
CI=0.00


[200-216]:
1jtgb_PU_200-216
CI=0.00


[217-239]:
1jtgb_PU_217-239
CI=2.55


[240-262 ]:
1jtgb_PU_240-262
CI=0.08