Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1juba_PU0_1-43
CI=2.89


[44-250]:
1juba_PU0_44-250
CI=4.12


[251-311 ]:
1juba_PU0_251-311
CI=1.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-43]:
1juba_PU1_1-43
CI=2.89


[44-75]:
1juba_PU1_44-75
CI=2.90


[76-165]:
1juba_PU1_76-165
CI=2.38


[166-250]:
1juba_PU1_166-250
CI=3.39


[251-311 ]:
1juba_PU1_251-311
CI=1.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-43]:
1juba_PU2_1-43
CI=2.89


[44-75]:
1juba_PU2_44-75
CI=2.90


[76-165]:
1juba_PU2_76-165
CI=2.38


[166-193]:
1juba_PU2_166-193
CI=0.48


[194-219]:
1juba_PU2_194-219
CI=2.70


[220-250]:
1juba_PU2_220-250
CI=1.40


[251-311 ]:
1juba_PU2_251-311
CI=1.90


Level 3
PU
Molecule needs Java 1.4 Structure


[1-43]:
1juba_PU3_1-43
CI=2.89


[44-75]:
1juba_PU3_44-75
CI=2.90


[76-95]:
1juba_PU3_76-95
CI=0.09


[96-165]:
1juba_PU3_96-165
CI=2.61


[166-193]:
1juba_PU3_166-193
CI=0.48


[194-219]:
1juba_PU3_194-219
CI=2.70


[220-250]:
1juba_PU3_220-250
CI=1.40


[251-311 ]:
1juba_PU3_251-311
CI=1.90


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1juba_PU4_1-17
CI=1.64


[18-43]:
1juba_PU4_18-43
CI=1.94


[44-75]:
1juba_PU4_44-75
CI=2.90


[76-95]:
1juba_PU4_76-95
CI=0.09


[96-165]:
1juba_PU4_96-165
CI=2.61


[166-193]:
1juba_PU4_166-193
CI=0.48


[194-219]:
1juba_PU4_194-219
CI=2.70


[220-250]:
1juba_PU4_220-250
CI=1.40


[251-311 ]:
1juba_PU4_251-311
CI=1.90


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1juba_PU5_1-17
CI=1.64


[18-43]:
1juba_PU5_18-43
CI=1.94


[44-75]:
1juba_PU5_44-75
CI=2.90


[76-95]:
1juba_PU5_76-95
CI=0.09


[96-165]:
1juba_PU5_96-165
CI=2.61


[166-193]:
1juba_PU5_166-193
CI=0.48


[194-219]:
1juba_PU5_194-219
CI=2.70


[220-250]:
1juba_PU5_220-250
CI=1.40


[251-289]:
1juba_PU5_251-289
CI=1.74


[290-311 ]:
1juba_PU5_290-311
CI=0.25


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1juba_PU6_1-17
CI=1.64


[18-43]:
1juba_PU6_18-43
CI=1.94


[44-75]:
1juba_PU6_44-75
CI=2.90


[76-95]:
1juba_PU6_76-95
CI=0.09


[96-165]:
1juba_PU6_96-165
CI=2.61


[166-193]:
1juba_PU6_166-193
CI=0.48


[194-219]:
1juba_PU6_194-219
CI=2.70


[220-250]:
1juba_PU6_220-250
CI=1.40


[251-269]:
1juba_PU6_251-269
CI=0.46


[270-289]:
1juba_PU6_270-289
CI=0.36


[290-311 ]:
1juba_PU6_290-311
CI=0.25


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1juba_PU7_1-17
CI=1.64


[18-43]:
1juba_PU7_18-43
CI=1.94


[44-75]:
1juba_PU7_44-75
CI=2.90


[76-95]:
1juba_PU7_76-95
CI=0.09


[96-126]:
1juba_PU7_96-126
CI=1.53


[127-165]:
1juba_PU7_127-165
CI=1.27


[166-193]:
1juba_PU7_166-193
CI=0.48


[194-219]:
1juba_PU7_194-219
CI=2.70


[220-250]:
1juba_PU7_220-250
CI=1.40


[251-269]:
1juba_PU7_251-269
CI=0.46


[270-289]:
1juba_PU7_270-289
CI=0.36


[290-311 ]:
1juba_PU7_290-311
CI=0.25


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1juba_PU_1-17
CI=1.64


[18-43]:
1juba_PU_18-43
CI=1.94


[44-75]:
1juba_PU_44-75
CI=2.90


[76-95]:
1juba_PU_76-95
CI=0.09


[96-126]:
1juba_PU_96-126
CI=1.53


[127-146]:
1juba_PU_127-146
CI=1.39


[147-165]:
1juba_PU_147-165
CI=0.00


[166-193]:
1juba_PU_166-193
CI=0.48


[194-219]:
1juba_PU_194-219
CI=2.70


[220-250]:
1juba_PU_220-250
CI=1.40


[251-269]:
1juba_PU_251-269
CI=0.46


[270-289]:
1juba_PU_270-289
CI=0.36


[290-311 ]:
1juba_PU_290-311
CI=0.25