Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jyaa_PU0_1-23
CI=0.41


[24-115 ]:
1jyaa_PU0_24-115
CI=3.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1jyaa_PU1_1-23
CI=0.41


[24-52]:
1jyaa_PU1_24-52
CI=2.63


[53-69]:
1jyaa_PU1_53-69
CI=0.00


[70-115 ]:
1jyaa_PU1_70-115
CI=2.03


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1jyaa_PU_1-23
CI=0.41


[24-52]:
1jyaa_PU_24-52
CI=2.63


[53-69]:
1jyaa_PU_53-69
CI=0.00


[70-89]:
1jyaa_PU_70-89
CI=2.07


[90-115 ]:
1jyaa_PU_90-115
CI=0.14