Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-92]:
1jyha_PU0_1-92
CI=3.68


[93-155 ]:
1jyha_PU0_93-155
CI=3.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-92]:
1jyha_PU1_1-92
CI=3.68


[93-108]:
1jyha_PU1_93-108
CI=0.11


[109-124]:
1jyha_PU1_109-124
CI=0.34


[125-155 ]:
1jyha_PU1_125-155
CI=2.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1jyha_PU2_1-19
CI=0.00


[20-70]:
1jyha_PU2_20-70
CI=2.70


[71-92]:
1jyha_PU2_71-92
CI=0.16


[93-108]:
1jyha_PU2_93-108
CI=0.11


[109-124]:
1jyha_PU2_109-124
CI=0.34


[125-155 ]:
1jyha_PU2_125-155
CI=2.39


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1jyha_PU_1-19
CI=0.00


[20-43]:
1jyha_PU_20-43
CI=0.22


[44-70]:
1jyha_PU_44-70
CI=2.53


[71-92]:
1jyha_PU_71-92
CI=0.16


[93-108]:
1jyha_PU_93-108
CI=0.11


[109-124]:
1jyha_PU_109-124
CI=0.34


[125-155 ]:
1jyha_PU_125-155
CI=2.39