Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1jyoe_PU0_1-47
CI=2.24


[48-130 ]:
1jyoe_PU0_48-130
CI=2.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jyoe_PU1_1-20
CI=1.11


[21-47]:
1jyoe_PU1_21-47
CI=2.32


[48-130 ]:
1jyoe_PU1_48-130
CI=2.52


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jyoe_PU2_1-20
CI=1.11


[21-47]:
1jyoe_PU2_21-47
CI=2.32


[48-96]:
1jyoe_PU2_48-96
CI=2.60


[97-130 ]:
1jyoe_PU2_97-130
CI=0.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1jyoe_PU3_1-20
CI=1.11


[21-47]:
1jyoe_PU3_21-47
CI=2.32


[48-96]:
1jyoe_PU3_48-96
CI=2.60


[97-114]:
1jyoe_PU3_97-114
CI=0.51


[115-130 ]:
1jyoe_PU3_115-130
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-20]:
1jyoe_PU_1-20
CI=1.11


[21-47]:
1jyoe_PU_21-47
CI=2.32


[48-69]:
1jyoe_PU_48-69
CI=0.00


[70-96]:
1jyoe_PU_70-96
CI=2.04


[97-114]:
1jyoe_PU_97-114
CI=0.51


[115-130 ]:
1jyoe_PU_115-130
CI=0.00