Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1k04a_PU0_1-36
CI=0.05


[37-142 ]:
1k04a_PU0_37-142
CI=1.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1k04a_PU1_1-19
CI=0.10


[20-36]:
1k04a_PU1_20-36
CI=0.00


[37-142 ]:
1k04a_PU1_37-142
CI=1.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1k04a_PU2_1-19
CI=0.10


[20-36]:
1k04a_PU2_20-36
CI=0.00


[37-87]:
1k04a_PU2_37-87
CI=0.26


[88-116]:
1k04a_PU2_88-116
CI=2.13


[117-142 ]:
1k04a_PU2_117-142
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1k04a_PU3_1-19
CI=0.10


[20-36]:
1k04a_PU3_20-36
CI=0.00


[37-53]:
1k04a_PU3_37-53
CI=0.00


[54-87]:
1k04a_PU3_54-87
CI=0.33


[88-116]:
1k04a_PU3_88-116
CI=2.13


[117-142 ]:
1k04a_PU3_117-142
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1k04a_PU_1-19
CI=0.10


[20-36]:
1k04a_PU_20-36
CI=0.00


[37-53]:
1k04a_PU_37-53
CI=0.00


[54-70]:
1k04a_PU_54-70
CI=0.00


[71-87]:
1k04a_PU_71-87
CI=0.00


[88-116]:
1k04a_PU_88-116
CI=2.13


[117-142 ]:
1k04a_PU_117-142
CI=0.00