Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1k12a_PU0_1-20
CI=0.09


[21-56]:
1k12a_PU0_21-56
CI=3.38


[57-158 ]:
1k12a_PU0_57-158
CI=5.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1k12a_PU1_1-20
CI=0.09


[21-56]:
1k12a_PU1_21-56
CI=3.38


[57-77]:
1k12a_PU1_57-77
CI=0.00


[78-118]:
1k12a_PU1_78-118
CI=3.64


[119-158 ]:
1k12a_PU1_119-158
CI=0.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1k12a_PU2_1-20
CI=0.09


[21-56]:
1k12a_PU2_21-56
CI=3.38


[57-77]:
1k12a_PU2_57-77
CI=0.00


[78-118]:
1k12a_PU2_78-118
CI=3.64


[119-135]:
1k12a_PU2_119-135
CI=0.00


[136-158 ]:
1k12a_PU2_136-158
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1k12a_PU3_1-20
CI=0.09


[21-40]:
1k12a_PU3_21-40
CI=0.56


[41-56]:
1k12a_PU3_41-56
CI=0.89


[57-77]:
1k12a_PU3_57-77
CI=0.00


[78-118]:
1k12a_PU3_78-118
CI=3.64


[119-135]:
1k12a_PU3_119-135
CI=0.00


[136-158 ]:
1k12a_PU3_136-158
CI=0.08


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-20]:
1k12a_PU_1-20
CI=0.09


[21-40]:
1k12a_PU_21-40
CI=0.56


[41-56]:
1k12a_PU_41-56
CI=0.89


[57-77]:
1k12a_PU_57-77
CI=0.00


[78-94]:
1k12a_PU_78-94
CI=0.42


[95-118]:
1k12a_PU_95-118
CI=0.39


[119-135]:
1k12a_PU_119-135
CI=0.00


[136-158 ]:
1k12a_PU_136-158
CI=0.08