Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-189]:
1k20a_PU0_1-189
CI=4.51


[190-310 ]:
1k20a_PU0_190-310
CI=3.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-114]:
1k20a_PU1_1-114
CI=4.43


[115-189]:
1k20a_PU1_115-189
CI=2.17


[190-310 ]:
1k20a_PU1_190-310
CI=3.59


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU2_1-41
CI=3.36


[42-57]:
1k20a_PU2_42-57
CI=0.68


[58-114]:
1k20a_PU2_58-114
CI=3.25


[115-189]:
1k20a_PU2_115-189
CI=2.17


[190-310 ]:
1k20a_PU2_190-310
CI=3.59


Level 3
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU3_1-41
CI=3.36


[42-57]:
1k20a_PU3_42-57
CI=0.68


[58-114]:
1k20a_PU3_58-114
CI=3.25


[115-189]:
1k20a_PU3_115-189
CI=2.17


[190-256]:
1k20a_PU3_190-256
CI=2.84


[257-310 ]:
1k20a_PU3_257-310
CI=2.20


Level 4
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU4_1-41
CI=3.36


[42-57]:
1k20a_PU4_42-57
CI=0.68


[58-114]:
1k20a_PU4_58-114
CI=3.25


[115-189]:
1k20a_PU4_115-189
CI=2.17


[190-256]:
1k20a_PU4_190-256
CI=2.84


[257-294]:
1k20a_PU4_257-294
CI=2.36


[295-310 ]:
1k20a_PU4_295-310
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU5_1-41
CI=3.36


[42-57]:
1k20a_PU5_42-57
CI=0.68


[58-114]:
1k20a_PU5_58-114
CI=3.25


[115-167]:
1k20a_PU5_115-167
CI=1.87


[168-189]:
1k20a_PU5_168-189
CI=0.34


[190-256]:
1k20a_PU5_190-256
CI=2.84


[257-294]:
1k20a_PU5_257-294
CI=2.36


[295-310 ]:
1k20a_PU5_295-310
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU6_1-41
CI=3.36


[42-57]:
1k20a_PU6_42-57
CI=0.68


[58-114]:
1k20a_PU6_58-114
CI=3.25


[115-146]:
1k20a_PU6_115-146
CI=0.76


[147-167]:
1k20a_PU6_147-167
CI=1.13


[168-189]:
1k20a_PU6_168-189
CI=0.34


[190-256]:
1k20a_PU6_190-256
CI=2.84


[257-294]:
1k20a_PU6_257-294
CI=2.36


[295-310 ]:
1k20a_PU6_295-310
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU7_1-41
CI=3.36


[42-57]:
1k20a_PU7_42-57
CI=0.68


[58-114]:
1k20a_PU7_58-114
CI=3.25


[115-146]:
1k20a_PU7_115-146
CI=0.76


[147-167]:
1k20a_PU7_147-167
CI=1.13


[168-189]:
1k20a_PU7_168-189
CI=0.34


[190-221]:
1k20a_PU7_190-221
CI=1.83


[222-256]:
1k20a_PU7_222-256
CI=0.70


[257-294]:
1k20a_PU7_257-294
CI=2.36


[295-310 ]:
1k20a_PU7_295-310
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU8_1-41
CI=3.36


[42-57]:
1k20a_PU8_42-57
CI=0.68


[58-114]:
1k20a_PU8_58-114
CI=3.25


[115-146]:
1k20a_PU8_115-146
CI=0.76


[147-167]:
1k20a_PU8_147-167
CI=1.13


[168-189]:
1k20a_PU8_168-189
CI=0.34


[190-221]:
1k20a_PU8_190-221
CI=1.83


[222-238]:
1k20a_PU8_222-238
CI=0.21


[239-256]:
1k20a_PU8_239-256
CI=0.61


[257-294]:
1k20a_PU8_257-294
CI=2.36


[295-310 ]:
1k20a_PU8_295-310
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-41]:
1k20a_PU9_1-41
CI=3.36


[42-57]:
1k20a_PU9_42-57
CI=0.68


[58-74]:
1k20a_PU9_58-74
CI=0.21


[75-114]:
1k20a_PU9_75-114
CI=2.49


[115-146]:
1k20a_PU9_115-146
CI=0.76


[147-167]:
1k20a_PU9_147-167
CI=1.13


[168-189]:
1k20a_PU9_168-189
CI=0.34


[190-221]:
1k20a_PU9_190-221
CI=1.83


[222-238]:
1k20a_PU9_222-238
CI=0.21


[239-256]:
1k20a_PU9_239-256
CI=0.61


[257-294]:
1k20a_PU9_257-294
CI=2.36


[295-310 ]:
1k20a_PU9_295-310
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k20a_PU10_1-21
CI=1.33


[22-41]:
1k20a_PU10_22-41
CI=1.03


[42-57]:
1k20a_PU10_42-57
CI=0.68


[58-74]:
1k20a_PU10_58-74
CI=0.21


[75-114]:
1k20a_PU10_75-114
CI=2.49


[115-146]:
1k20a_PU10_115-146
CI=0.76


[147-167]:
1k20a_PU10_147-167
CI=1.13


[168-189]:
1k20a_PU10_168-189
CI=0.34


[190-221]:
1k20a_PU10_190-221
CI=1.83


[222-238]:
1k20a_PU10_222-238
CI=0.21


[239-256]:
1k20a_PU10_239-256
CI=0.61


[257-294]:
1k20a_PU10_257-294
CI=2.36


[295-310 ]:
1k20a_PU10_295-310
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k20a_PU11_1-21
CI=1.33


[22-41]:
1k20a_PU11_22-41
CI=1.03


[42-57]:
1k20a_PU11_42-57
CI=0.68


[58-74]:
1k20a_PU11_58-74
CI=0.21


[75-96]:
1k20a_PU11_75-96
CI=0.93


[97-114]:
1k20a_PU11_97-114
CI=0.41


[115-146]:
1k20a_PU11_115-146
CI=0.76


[147-167]:
1k20a_PU11_147-167
CI=1.13


[168-189]:
1k20a_PU11_168-189
CI=0.34


[190-221]:
1k20a_PU11_190-221
CI=1.83


[222-238]:
1k20a_PU11_222-238
CI=0.21


[239-256]:
1k20a_PU11_239-256
CI=0.61


[257-294]:
1k20a_PU11_257-294
CI=2.36


[295-310 ]:
1k20a_PU11_295-310
CI=0.00


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-21]:
1k20a_PU_1-21
CI=1.33


[22-41]:
1k20a_PU_22-41
CI=1.03


[42-57]:
1k20a_PU_42-57
CI=0.68


[58-74]:
1k20a_PU_58-74
CI=0.21


[75-96]:
1k20a_PU_75-96
CI=0.93


[97-114]:
1k20a_PU_97-114
CI=0.41


[115-146]:
1k20a_PU_115-146
CI=0.76


[147-167]:
1k20a_PU_147-167
CI=1.13


[168-189]:
1k20a_PU_168-189
CI=0.34


[190-221]:
1k20a_PU_190-221
CI=1.83


[222-238]:
1k20a_PU_222-238
CI=0.21


[239-256]:
1k20a_PU_239-256
CI=0.61


[257-278]:
1k20a_PU_257-278
CI=0.25


[279-294]:
1k20a_PU_279-294
CI=0.45


[295-310 ]:
1k20a_PU_295-310
CI=0.00