Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1k2xa_PU0_1-59
CI=1.03


[60-155 ]:
1k2xa_PU0_60-155
CI=3.94


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1k2xa_PU1_1-59
CI=1.03


[60-78]:
1k2xa_PU1_60-78
CI=1.68


[79-138]:
1k2xa_PU1_79-138
CI=3.97


[139-155 ]:
1k2xa_PU1_139-155
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1k2xa_PU2_1-18
CI=0.00


[19-34]:
1k2xa_PU2_19-34
CI=0.00


[35-59]:
1k2xa_PU2_35-59
CI=0.82


[60-78]:
1k2xa_PU2_60-78
CI=1.68


[79-138]:
1k2xa_PU2_79-138
CI=3.97


[139-155 ]:
1k2xa_PU2_139-155
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1k2xa_PU3_1-18
CI=0.00


[19-34]:
1k2xa_PU3_19-34
CI=0.00


[35-59]:
1k2xa_PU3_35-59
CI=0.82


[60-78]:
1k2xa_PU3_60-78
CI=1.68


[79-121]:
1k2xa_PU3_79-121
CI=4.17


[122-138]:
1k2xa_PU3_122-138
CI=0.21


[139-155 ]:
1k2xa_PU3_139-155
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1k2xa_PU_1-18
CI=0.00


[19-34]:
1k2xa_PU_19-34
CI=0.00


[35-59]:
1k2xa_PU_35-59
CI=0.82


[60-78]:
1k2xa_PU_60-78
CI=1.68


[79-105]:
1k2xa_PU_79-105
CI=2.93


[106-121]:
1k2xa_PU_106-121
CI=0.67


[122-138]:
1k2xa_PU_122-138
CI=0.21


[139-155 ]:
1k2xa_PU_139-155
CI=0.00