Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k3sa_PU0_1-42
CI=1.55


[43-60]:
1k3sa_PU0_43-60
CI=0.11


[61-106 ]:
1k3sa_PU0_61-106
CI=1.37


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1k3sa_PU1_1-17
CI=0.11


[18-42]:
1k3sa_PU1_18-42
CI=2.13


[43-60]:
1k3sa_PU1_43-60
CI=0.11


[61-106 ]:
1k3sa_PU1_61-106
CI=1.37


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1k3sa_PU_1-17
CI=0.11


[18-42]:
1k3sa_PU_18-42
CI=2.13


[43-60]:
1k3sa_PU_43-60
CI=0.11


[61-77]:
1k3sa_PU_61-77
CI=2.52


[78-106 ]:
1k3sa_PU_78-106
CI=0.18