Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k55a_PU0_1-39
CI=2.93


[40-171]:
1k55a_PU0_40-171
CI=3.13


[172-244 ]:
1k55a_PU0_172-244
CI=4.03


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k55a_PU1_1-39
CI=2.93


[40-65]:
1k55a_PU1_40-65
CI=0.29


[66-98]:
1k55a_PU1_66-98
CI=2.05


[99-171]:
1k55a_PU1_99-171
CI=1.95


[172-244 ]:
1k55a_PU1_172-244
CI=4.03


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k55a_PU2_1-39
CI=2.93


[40-65]:
1k55a_PU2_40-65
CI=0.29


[66-98]:
1k55a_PU2_66-98
CI=2.05


[99-140]:
1k55a_PU2_99-140
CI=2.27


[141-171]:
1k55a_PU2_141-171
CI=0.72


[172-244 ]:
1k55a_PU2_172-244
CI=4.03


Level 3
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k55a_PU3_1-39
CI=2.93


[40-65]:
1k55a_PU3_40-65
CI=0.29


[66-98]:
1k55a_PU3_66-98
CI=2.05


[99-119]:
1k55a_PU3_99-119
CI=0.08


[120-140]:
1k55a_PU3_120-140
CI=2.76


[141-171]:
1k55a_PU3_141-171
CI=0.72


[172-244 ]:
1k55a_PU3_172-244
CI=4.03


Level 4
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k55a_PU4_1-39
CI=2.93


[40-65]:
1k55a_PU4_40-65
CI=0.29


[66-98]:
1k55a_PU4_66-98
CI=2.05


[99-119]:
1k55a_PU4_99-119
CI=0.08


[120-140]:
1k55a_PU4_120-140
CI=2.76


[141-171]:
1k55a_PU4_141-171
CI=0.72


[172-226]:
1k55a_PU4_172-226
CI=4.29


[227-244 ]:
1k55a_PU4_227-244
CI=0.10


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1k55a_PU5_1-17
CI=0.00


[18-39]:
1k55a_PU5_18-39
CI=2.13


[40-65]:
1k55a_PU5_40-65
CI=0.29


[66-98]:
1k55a_PU5_66-98
CI=2.05


[99-119]:
1k55a_PU5_99-119
CI=0.08


[120-140]:
1k55a_PU5_120-140
CI=2.76


[141-171]:
1k55a_PU5_141-171
CI=0.72


[172-226]:
1k55a_PU5_172-226
CI=4.29


[227-244 ]:
1k55a_PU5_227-244
CI=0.10


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1k55a_PU6_1-17
CI=0.00


[18-39]:
1k55a_PU6_18-39
CI=2.13


[40-65]:
1k55a_PU6_40-65
CI=0.29


[66-98]:
1k55a_PU6_66-98
CI=2.05


[99-119]:
1k55a_PU6_99-119
CI=0.08


[120-140]:
1k55a_PU6_120-140
CI=2.76


[141-171]:
1k55a_PU6_141-171
CI=0.72


[172-188]:
1k55a_PU6_172-188
CI=1.32


[189-226]:
1k55a_PU6_189-226
CI=3.23


[227-244 ]:
1k55a_PU6_227-244
CI=0.10


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1k55a_PU7_1-17
CI=0.00


[18-39]:
1k55a_PU7_18-39
CI=2.13


[40-65]:
1k55a_PU7_40-65
CI=0.29


[66-82]:
1k55a_PU7_66-82
CI=0.54


[83-98]:
1k55a_PU7_83-98
CI=0.33


[99-119]:
1k55a_PU7_99-119
CI=0.08


[120-140]:
1k55a_PU7_120-140
CI=2.76


[141-171]:
1k55a_PU7_141-171
CI=0.72


[172-188]:
1k55a_PU7_172-188
CI=1.32


[189-226]:
1k55a_PU7_189-226
CI=3.23


[227-244 ]:
1k55a_PU7_227-244
CI=0.10


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1k55a_PU_1-17
CI=0.00


[18-39]:
1k55a_PU_18-39
CI=2.13


[40-65]:
1k55a_PU_40-65
CI=0.29


[66-82]:
1k55a_PU_66-82
CI=0.54


[83-98]:
1k55a_PU_83-98
CI=0.33


[99-119]:
1k55a_PU_99-119
CI=0.08


[120-140]:
1k55a_PU_120-140
CI=2.76


[141-171]:
1k55a_PU_141-171
CI=0.72


[172-188]:
1k55a_PU_172-188
CI=1.32


[189-205]:
1k55a_PU_189-205
CI=0.87


[206-226]:
1k55a_PU_206-226
CI=0.27


[227-244 ]:
1k55a_PU_227-244
CI=0.10