Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-171]:
1k5ca_PU0_1-171
CI=6.40


[172-333 ]:
1k5ca_PU0_172-333
CI=7.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k5ca_PU1_1-75
CI=4.47


[76-171]:
1k5ca_PU1_76-171
CI=5.77


[172-333 ]:
1k5ca_PU1_172-333
CI=7.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k5ca_PU2_1-75
CI=4.47


[76-171]:
1k5ca_PU2_76-171
CI=5.77


[172-246]:
1k5ca_PU2_172-246
CI=5.64


[247-333 ]:
1k5ca_PU2_247-333
CI=5.66


Level 3
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k5ca_PU3_1-75
CI=4.47


[76-95]:
1k5ca_PU3_76-95
CI=0.83


[96-171]:
1k5ca_PU3_96-171
CI=5.64


[172-246]:
1k5ca_PU3_172-246
CI=5.64


[247-333 ]:
1k5ca_PU3_247-333
CI=5.66


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU4_1-21
CI=1.52


[22-75]:
1k5ca_PU4_22-75
CI=3.81


[76-95]:
1k5ca_PU4_76-95
CI=0.83


[96-171]:
1k5ca_PU4_96-171
CI=5.64


[172-246]:
1k5ca_PU4_172-246
CI=5.64


[247-333 ]:
1k5ca_PU4_247-333
CI=5.66


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU5_1-21
CI=1.52


[22-75]:
1k5ca_PU5_22-75
CI=3.81


[76-95]:
1k5ca_PU5_76-95
CI=0.83


[96-171]:
1k5ca_PU5_96-171
CI=5.64


[172-246]:
1k5ca_PU5_172-246
CI=5.64


[247-271]:
1k5ca_PU5_247-271
CI=0.98


[272-333 ]:
1k5ca_PU5_272-333
CI=5.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU6_1-21
CI=1.52


[22-75]:
1k5ca_PU6_22-75
CI=3.81


[76-95]:
1k5ca_PU6_76-95
CI=0.83


[96-131]:
1k5ca_PU6_96-131
CI=3.21


[132-171]:
1k5ca_PU6_132-171
CI=3.10


[172-246]:
1k5ca_PU6_172-246
CI=5.64


[247-271]:
1k5ca_PU6_247-271
CI=0.98


[272-333 ]:
1k5ca_PU6_272-333
CI=5.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU7_1-21
CI=1.52


[22-75]:
1k5ca_PU7_22-75
CI=3.81


[76-95]:
1k5ca_PU7_76-95
CI=0.83


[96-131]:
1k5ca_PU7_96-131
CI=3.21


[132-148]:
1k5ca_PU7_132-148
CI=0.64


[149-171]:
1k5ca_PU7_149-171
CI=1.13


[172-246]:
1k5ca_PU7_172-246
CI=5.64


[247-271]:
1k5ca_PU7_247-271
CI=0.98


[272-333 ]:
1k5ca_PU7_272-333
CI=5.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU8_1-21
CI=1.52


[22-59]:
1k5ca_PU8_22-59
CI=2.16


[60-75]:
1k5ca_PU8_60-75
CI=0.00


[76-95]:
1k5ca_PU8_76-95
CI=0.83


[96-131]:
1k5ca_PU8_96-131
CI=3.21


[132-148]:
1k5ca_PU8_132-148
CI=0.64


[149-171]:
1k5ca_PU8_149-171
CI=1.13


[172-246]:
1k5ca_PU8_172-246
CI=5.64


[247-271]:
1k5ca_PU8_247-271
CI=0.98


[272-333 ]:
1k5ca_PU8_272-333
CI=5.08


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU9_1-21
CI=1.52


[22-42]:
1k5ca_PU9_22-42
CI=0.09


[43-59]:
1k5ca_PU9_43-59
CI=0.00


[60-75]:
1k5ca_PU9_60-75
CI=0.00


[76-95]:
1k5ca_PU9_76-95
CI=0.83


[96-131]:
1k5ca_PU9_96-131
CI=3.21


[132-148]:
1k5ca_PU9_132-148
CI=0.64


[149-171]:
1k5ca_PU9_149-171
CI=1.13


[172-246]:
1k5ca_PU9_172-246
CI=5.64


[247-271]:
1k5ca_PU9_247-271
CI=0.98


[272-333 ]:
1k5ca_PU9_272-333
CI=5.08


Level 10
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU10_1-21
CI=1.52


[22-42]:
1k5ca_PU10_22-42
CI=0.09


[43-59]:
1k5ca_PU10_43-59
CI=0.00


[60-75]:
1k5ca_PU10_60-75
CI=0.00


[76-95]:
1k5ca_PU10_76-95
CI=0.83


[96-131]:
1k5ca_PU10_96-131
CI=3.21


[132-148]:
1k5ca_PU10_132-148
CI=0.64


[149-171]:
1k5ca_PU10_149-171
CI=1.13


[172-226]:
1k5ca_PU10_172-226
CI=4.91


[227-246]:
1k5ca_PU10_227-246
CI=0.00


[247-271]:
1k5ca_PU10_247-271
CI=0.98


[272-333 ]:
1k5ca_PU10_272-333
CI=5.08


Level 11
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU11_1-21
CI=1.52


[22-42]:
1k5ca_PU11_22-42
CI=0.09


[43-59]:
1k5ca_PU11_43-59
CI=0.00


[60-75]:
1k5ca_PU11_60-75
CI=0.00


[76-95]:
1k5ca_PU11_76-95
CI=0.83


[96-131]:
1k5ca_PU11_96-131
CI=3.21


[132-148]:
1k5ca_PU11_132-148
CI=0.64


[149-171]:
1k5ca_PU11_149-171
CI=1.13


[172-226]:
1k5ca_PU11_172-226
CI=4.91


[227-246]:
1k5ca_PU11_227-246
CI=0.00


[247-271]:
1k5ca_PU11_247-271
CI=0.98


[272-288]:
1k5ca_PU11_272-288
CI=0.00


[289-333 ]:
1k5ca_PU11_289-333
CI=4.18


Level 12
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU12_1-21
CI=1.52


[22-42]:
1k5ca_PU12_22-42
CI=0.09


[43-59]:
1k5ca_PU12_43-59
CI=0.00


[60-75]:
1k5ca_PU12_60-75
CI=0.00


[76-95]:
1k5ca_PU12_76-95
CI=0.83


[96-131]:
1k5ca_PU12_96-131
CI=3.21


[132-148]:
1k5ca_PU12_132-148
CI=0.64


[149-171]:
1k5ca_PU12_149-171
CI=1.13


[172-226]:
1k5ca_PU12_172-226
CI=4.91


[227-246]:
1k5ca_PU12_227-246
CI=0.00


[247-271]:
1k5ca_PU12_247-271
CI=0.98


[272-288]:
1k5ca_PU12_272-288
CI=0.00


[289-305]:
1k5ca_PU12_289-305
CI=0.00


[306-333 ]:
1k5ca_PU12_306-333
CI=1.75


Level 13
PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU13_1-21
CI=1.52


[22-42]:
1k5ca_PU13_22-42
CI=0.09


[43-59]:
1k5ca_PU13_43-59
CI=0.00


[60-75]:
1k5ca_PU13_60-75
CI=0.00


[76-95]:
1k5ca_PU13_76-95
CI=0.83


[96-131]:
1k5ca_PU13_96-131
CI=3.21


[132-148]:
1k5ca_PU13_132-148
CI=0.64


[149-171]:
1k5ca_PU13_149-171
CI=1.13


[172-189]:
1k5ca_PU13_172-189
CI=0.59


[190-226]:
1k5ca_PU13_190-226
CI=2.28


[227-246]:
1k5ca_PU13_227-246
CI=0.00


[247-271]:
1k5ca_PU13_247-271
CI=0.98


[272-288]:
1k5ca_PU13_272-288
CI=0.00


[289-305]:
1k5ca_PU13_289-305
CI=0.00


[306-333 ]:
1k5ca_PU13_306-333
CI=1.75


Final level 14

PU
Molecule needs Java 1.4 Structure


[1-21]:
1k5ca_PU_1-21
CI=1.52


[22-42]:
1k5ca_PU_22-42
CI=0.09


[43-59]:
1k5ca_PU_43-59
CI=0.00


[60-75]:
1k5ca_PU_60-75
CI=0.00


[76-95]:
1k5ca_PU_76-95
CI=0.83


[96-115]:
1k5ca_PU_96-115
CI=0.09


[116-131]:
1k5ca_PU_116-131
CI=0.00


[132-148]:
1k5ca_PU_132-148
CI=0.64


[149-171]:
1k5ca_PU_149-171
CI=1.13


[172-189]:
1k5ca_PU_172-189
CI=0.59


[190-226]:
1k5ca_PU_190-226
CI=2.28


[227-246]:
1k5ca_PU_227-246
CI=0.00


[247-271]:
1k5ca_PU_247-271
CI=0.98


[272-288]:
1k5ca_PU_272-288
CI=0.00


[289-305]:
1k5ca_PU_289-305
CI=0.00


[306-333 ]:
1k5ca_PU_306-333
CI=1.75