Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k66a_PU0_1-39
CI=2.61


[40-120]:
1k66a_PU0_40-120
CI=3.35


[121-149 ]:
1k66a_PU0_121-149
CI=0.44


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k66a_PU1_1-39
CI=2.61


[40-63]:
1k66a_PU1_40-63
CI=1.70


[64-120]:
1k66a_PU1_64-120
CI=2.96


[121-149 ]:
1k66a_PU1_121-149
CI=0.44


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1k66a_PU2_1-39
CI=2.61


[40-63]:
1k66a_PU2_40-63
CI=1.70


[64-98]:
1k66a_PU2_64-98
CI=2.34


[99-120]:
1k66a_PU2_99-120
CI=1.09


[121-149 ]:
1k66a_PU2_121-149
CI=0.44


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1k66a_PU_1-19
CI=0.20


[20-39]:
1k66a_PU_20-39
CI=0.09


[40-63]:
1k66a_PU_40-63
CI=1.70


[64-98]:
1k66a_PU_64-98
CI=2.34


[99-120]:
1k66a_PU_99-120
CI=1.09


[121-149 ]:
1k66a_PU_121-149
CI=0.44