Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-103]:
1k6xa_PU0_1-103
CI=3.53


[104-324 ]:
1k6xa_PU0_104-324
CI=4.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU1_1-56
CI=3.16


[57-103]:
1k6xa_PU1_57-103
CI=1.82


[104-324 ]:
1k6xa_PU1_104-324
CI=4.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU2_1-56
CI=3.16


[57-103]:
1k6xa_PU2_57-103
CI=1.82


[104-147]:
1k6xa_PU2_104-147
CI=2.88


[148-324 ]:
1k6xa_PU2_148-324
CI=3.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU3_1-56
CI=3.16


[57-103]:
1k6xa_PU3_57-103
CI=1.82


[104-147]:
1k6xa_PU3_104-147
CI=2.88


[148-242]:
1k6xa_PU3_148-242
CI=3.40


[243-272]:
1k6xa_PU3_243-272
CI=0.69


[273-324 ]:
1k6xa_PU3_273-324
CI=0.57


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU4_1-56
CI=3.16


[57-103]:
1k6xa_PU4_57-103
CI=1.82


[104-147]:
1k6xa_PU4_104-147
CI=2.88


[148-242]:
1k6xa_PU4_148-242
CI=3.40


[243-272]:
1k6xa_PU4_243-272
CI=0.69


[273-300]:
1k6xa_PU4_273-300
CI=0.65


[301-324 ]:
1k6xa_PU4_301-324
CI=0.46


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU5_1-56
CI=3.16


[57-103]:
1k6xa_PU5_57-103
CI=1.82


[104-147]:
1k6xa_PU5_104-147
CI=2.88


[148-195]:
1k6xa_PU5_148-195
CI=2.51


[196-215]:
1k6xa_PU5_196-215
CI=0.09


[216-242]:
1k6xa_PU5_216-242
CI=0.98


[243-272]:
1k6xa_PU5_243-272
CI=0.69


[273-300]:
1k6xa_PU5_273-300
CI=0.65


[301-324 ]:
1k6xa_PU5_301-324
CI=0.46


Level 6
PU
Molecule needs Java 1.4 Structure


[1-56]:
1k6xa_PU6_1-56
CI=3.16


[57-103]:
1k6xa_PU6_57-103
CI=1.82


[104-147]:
1k6xa_PU6_104-147
CI=2.88


[148-177]:
1k6xa_PU6_148-177
CI=2.52


[178-195]:
1k6xa_PU6_178-195
CI=0.10


[196-215]:
1k6xa_PU6_196-215
CI=0.09


[216-242]:
1k6xa_PU6_216-242
CI=0.98


[243-272]:
1k6xa_PU6_243-272
CI=0.69


[273-300]:
1k6xa_PU6_273-300
CI=0.65


[301-324 ]:
1k6xa_PU6_301-324
CI=0.46


Level 7
PU
Molecule needs Java 1.4 Structure


[1-33]:
1k6xa_PU7_1-33
CI=2.02


[34-56]:
1k6xa_PU7_34-56
CI=1.39


[57-103]:
1k6xa_PU7_57-103
CI=1.82


[104-147]:
1k6xa_PU7_104-147
CI=2.88


[148-177]:
1k6xa_PU7_148-177
CI=2.52


[178-195]:
1k6xa_PU7_178-195
CI=0.10


[196-215]:
1k6xa_PU7_196-215
CI=0.09


[216-242]:
1k6xa_PU7_216-242
CI=0.98


[243-272]:
1k6xa_PU7_243-272
CI=0.69


[273-300]:
1k6xa_PU7_273-300
CI=0.65


[301-324 ]:
1k6xa_PU7_301-324
CI=0.46


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1k6xa_PU8_1-33
CI=2.02


[34-56]:
1k6xa_PU8_34-56
CI=1.39


[57-103]:
1k6xa_PU8_57-103
CI=1.82


[104-131]:
1k6xa_PU8_104-131
CI=2.23


[132-147]:
1k6xa_PU8_132-147
CI=0.34


[148-177]:
1k6xa_PU8_148-177
CI=2.52


[178-195]:
1k6xa_PU8_178-195
CI=0.10


[196-215]:
1k6xa_PU8_196-215
CI=0.09


[216-242]:
1k6xa_PU8_216-242
CI=0.98


[243-272]:
1k6xa_PU8_243-272
CI=0.69


[273-300]:
1k6xa_PU8_273-300
CI=0.65


[301-324 ]:
1k6xa_PU8_301-324
CI=0.46


Level 9
PU
Molecule needs Java 1.4 Structure


[1-33]:
1k6xa_PU9_1-33
CI=2.02


[34-56]:
1k6xa_PU9_34-56
CI=1.39


[57-76]:
1k6xa_PU9_57-76
CI=0.18


[77-103]:
1k6xa_PU9_77-103
CI=0.55


[104-131]:
1k6xa_PU9_104-131
CI=2.23


[132-147]:
1k6xa_PU9_132-147
CI=0.34


[148-177]:
1k6xa_PU9_148-177
CI=2.52


[178-195]:
1k6xa_PU9_178-195
CI=0.10


[196-215]:
1k6xa_PU9_196-215
CI=0.09


[216-242]:
1k6xa_PU9_216-242
CI=0.98


[243-272]:
1k6xa_PU9_243-272
CI=0.69


[273-300]:
1k6xa_PU9_273-300
CI=0.65


[301-324 ]:
1k6xa_PU9_301-324
CI=0.46


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1k6xa_PU_1-17
CI=0.44


[18-33]:
1k6xa_PU_18-33
CI=0.34


[34-56]:
1k6xa_PU_34-56
CI=1.39


[57-76]:
1k6xa_PU_57-76
CI=0.18


[77-103]:
1k6xa_PU_77-103
CI=0.55


[104-131]:
1k6xa_PU_104-131
CI=2.23


[132-147]:
1k6xa_PU_132-147
CI=0.34


[148-177]:
1k6xa_PU_148-177
CI=2.52


[178-195]:
1k6xa_PU_178-195
CI=0.10


[196-215]:
1k6xa_PU_196-215
CI=0.09


[216-242]:
1k6xa_PU_216-242
CI=0.98


[243-272]:
1k6xa_PU_243-272
CI=0.69


[273-300]:
1k6xa_PU_273-300
CI=0.65


[301-324 ]:
1k6xa_PU_301-324
CI=0.46