Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k7ca_PU0_1-75
CI=4.19


[76-109]:
1k7ca_PU0_76-109
CI=2.75


[110-233 ]:
1k7ca_PU0_110-233
CI=3.01


Level 1
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k7ca_PU1_1-75
CI=4.19


[76-109]:
1k7ca_PU1_76-109
CI=2.75


[110-171]:
1k7ca_PU1_110-171
CI=2.66


[172-233 ]:
1k7ca_PU1_172-233
CI=1.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k7ca_PU2_1-75
CI=4.19


[76-109]:
1k7ca_PU2_76-109
CI=2.75


[110-171]:
1k7ca_PU2_110-171
CI=2.66


[172-208]:
1k7ca_PU2_172-208
CI=1.32


[209-233 ]:
1k7ca_PU2_209-233
CI=1.04


Level 3
PU
Molecule needs Java 1.4 Structure


[1-75]:
1k7ca_PU3_1-75
CI=4.19


[76-109]:
1k7ca_PU3_76-109
CI=2.75


[110-130]:
1k7ca_PU3_110-130
CI=0.43


[131-171]:
1k7ca_PU3_131-171
CI=2.28


[172-208]:
1k7ca_PU3_172-208
CI=1.32


[209-233 ]:
1k7ca_PU3_209-233
CI=1.04


Level 4
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k7ca_PU4_1-42
CI=4.06


[43-75]:
1k7ca_PU4_43-75
CI=1.02


[76-109]:
1k7ca_PU4_76-109
CI=2.75


[110-130]:
1k7ca_PU4_110-130
CI=0.43


[131-171]:
1k7ca_PU4_131-171
CI=2.28


[172-208]:
1k7ca_PU4_172-208
CI=1.32


[209-233 ]:
1k7ca_PU4_209-233
CI=1.04


Level 5
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k7ca_PU5_1-42
CI=4.06


[43-59]:
1k7ca_PU5_43-59
CI=0.32


[60-75]:
1k7ca_PU5_60-75
CI=0.11


[76-109]:
1k7ca_PU5_76-109
CI=2.75


[110-130]:
1k7ca_PU5_110-130
CI=0.43


[131-171]:
1k7ca_PU5_131-171
CI=2.28


[172-208]:
1k7ca_PU5_172-208
CI=1.32


[209-233 ]:
1k7ca_PU5_209-233
CI=1.04


Level 6
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k7ca_PU6_1-42
CI=4.06


[43-59]:
1k7ca_PU6_43-59
CI=0.32


[60-75]:
1k7ca_PU6_60-75
CI=0.11


[76-109]:
1k7ca_PU6_76-109
CI=2.75


[110-130]:
1k7ca_PU6_110-130
CI=0.43


[131-171]:
1k7ca_PU6_131-171
CI=2.28


[172-188]:
1k7ca_PU6_172-188
CI=0.21


[189-208]:
1k7ca_PU6_189-208
CI=0.65


[209-233 ]:
1k7ca_PU6_209-233
CI=1.04


Level 7
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k7ca_PU7_1-42
CI=4.06


[43-59]:
1k7ca_PU7_43-59
CI=0.32


[60-75]:
1k7ca_PU7_60-75
CI=0.11


[76-109]:
1k7ca_PU7_76-109
CI=2.75


[110-130]:
1k7ca_PU7_110-130
CI=0.43


[131-149]:
1k7ca_PU7_131-149
CI=0.58


[150-171]:
1k7ca_PU7_150-171
CI=1.18


[172-188]:
1k7ca_PU7_172-188
CI=0.21


[189-208]:
1k7ca_PU7_189-208
CI=0.65


[209-233 ]:
1k7ca_PU7_209-233
CI=1.04


Level 8
PU
Molecule needs Java 1.4 Structure


[1-42]:
1k7ca_PU8_1-42
CI=4.06


[43-59]:
1k7ca_PU8_43-59
CI=0.32


[60-75]:
1k7ca_PU8_60-75
CI=0.11


[76-92]:
1k7ca_PU8_76-92
CI=0.75


[93-109]:
1k7ca_PU8_93-109
CI=2.41


[110-130]:
1k7ca_PU8_110-130
CI=0.43


[131-149]:
1k7ca_PU8_131-149
CI=0.58


[150-171]:
1k7ca_PU8_150-171
CI=1.18


[172-188]:
1k7ca_PU8_172-188
CI=0.21


[189-208]:
1k7ca_PU8_189-208
CI=0.65


[209-233 ]:
1k7ca_PU8_209-233
CI=1.04


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1k7ca_PU_1-25
CI=2.26


[26-42]:
1k7ca_PU_26-42
CI=0.22


[43-59]:
1k7ca_PU_43-59
CI=0.32


[60-75]:
1k7ca_PU_60-75
CI=0.11


[76-92]:
1k7ca_PU_76-92
CI=0.75


[93-109]:
1k7ca_PU_93-109
CI=2.41


[110-130]:
1k7ca_PU_110-130
CI=0.43


[131-149]:
1k7ca_PU_131-149
CI=0.58


[150-171]:
1k7ca_PU_150-171
CI=1.18


[172-188]:
1k7ca_PU_172-188
CI=0.21


[189-208]:
1k7ca_PU_189-208
CI=0.65


[209-233 ]:
1k7ca_PU_209-233
CI=1.04