Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1k9ja_PU0_1-40
CI=1.28


[41-117]:
1k9ja_PU0_41-117
CI=3.34


[118-130 ]:
1k9ja_PU0_118-130
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1k9ja_PU1_1-18
CI=1.84


[19-40]:
1k9ja_PU1_19-40
CI=0.67


[41-117]:
1k9ja_PU1_41-117
CI=3.34


[118-130 ]:
1k9ja_PU1_118-130
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1k9ja_PU2_1-18
CI=1.84


[19-40]:
1k9ja_PU2_19-40
CI=0.67


[41-60]:
1k9ja_PU2_41-60
CI=0.18


[61-117]:
1k9ja_PU2_61-117
CI=3.65


[118-130 ]:
1k9ja_PU2_118-130
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1k9ja_PU_1-18
CI=1.84


[19-40]:
1k9ja_PU_19-40
CI=0.67


[41-60]:
1k9ja_PU_41-60
CI=0.18


[61-90]:
1k9ja_PU_61-90
CI=1.64


[91-117]:
1k9ja_PU_91-117
CI=3.58


[118-130 ]:
1k9ja_PU_118-130
CI=0.00