Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-129]:
1ka1a_PU0_1-129
CI=2.24


[130-354 ]:
1ka1a_PU0_130-354
CI=5.56


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU1_1-23
CI=0.00


[24-45]:
1ka1a_PU1_24-45
CI=1.46


[46-129]:
1ka1a_PU1_46-129
CI=2.03


[130-354 ]:
1ka1a_PU1_130-354
CI=5.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU2_1-23
CI=0.00


[24-45]:
1ka1a_PU2_24-45
CI=1.46


[46-88]:
1ka1a_PU2_46-88
CI=0.65


[89-105]:
1ka1a_PU2_89-105
CI=0.00


[106-129]:
1ka1a_PU2_106-129
CI=0.31


[130-354 ]:
1ka1a_PU2_130-354
CI=5.56


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU3_1-23
CI=0.00


[24-45]:
1ka1a_PU3_24-45
CI=1.46


[46-72]:
1ka1a_PU3_46-72
CI=0.47


[73-88]:
1ka1a_PU3_73-88
CI=0.11


[89-105]:
1ka1a_PU3_89-105
CI=0.00


[106-129]:
1ka1a_PU3_106-129
CI=0.31


[130-354 ]:
1ka1a_PU3_130-354
CI=5.56


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU4_1-23
CI=0.00


[24-45]:
1ka1a_PU4_24-45
CI=1.46


[46-72]:
1ka1a_PU4_46-72
CI=0.47


[73-88]:
1ka1a_PU4_73-88
CI=0.11


[89-105]:
1ka1a_PU4_89-105
CI=0.00


[106-129]:
1ka1a_PU4_106-129
CI=0.31


[130-174]:
1ka1a_PU4_130-174
CI=3.77


[175-219]:
1ka1a_PU4_175-219
CI=3.41


[220-354 ]:
1ka1a_PU4_220-354
CI=4.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU5_1-23
CI=0.00


[24-45]:
1ka1a_PU5_24-45
CI=1.46


[46-72]:
1ka1a_PU5_46-72
CI=0.47


[73-88]:
1ka1a_PU5_73-88
CI=0.11


[89-105]:
1ka1a_PU5_89-105
CI=0.00


[106-129]:
1ka1a_PU5_106-129
CI=0.31


[130-174]:
1ka1a_PU5_130-174
CI=3.77


[175-219]:
1ka1a_PU5_175-219
CI=3.41


[220-283]:
1ka1a_PU5_220-283
CI=3.34


[284-354 ]:
1ka1a_PU5_284-354
CI=2.64


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU6_1-23
CI=0.00


[24-45]:
1ka1a_PU6_24-45
CI=1.46


[46-72]:
1ka1a_PU6_46-72
CI=0.47


[73-88]:
1ka1a_PU6_73-88
CI=0.11


[89-105]:
1ka1a_PU6_89-105
CI=0.00


[106-129]:
1ka1a_PU6_106-129
CI=0.31


[130-174]:
1ka1a_PU6_130-174
CI=3.77


[175-219]:
1ka1a_PU6_175-219
CI=3.41


[220-283]:
1ka1a_PU6_220-283
CI=3.34


[284-334]:
1ka1a_PU6_284-334
CI=2.75


[335-354 ]:
1ka1a_PU6_335-354
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU7_1-23
CI=0.00


[24-45]:
1ka1a_PU7_24-45
CI=1.46


[46-72]:
1ka1a_PU7_46-72
CI=0.47


[73-88]:
1ka1a_PU7_73-88
CI=0.11


[89-105]:
1ka1a_PU7_89-105
CI=0.00


[106-129]:
1ka1a_PU7_106-129
CI=0.31


[130-174]:
1ka1a_PU7_130-174
CI=3.77


[175-193]:
1ka1a_PU7_175-193
CI=1.64


[194-219]:
1ka1a_PU7_194-219
CI=2.78


[220-283]:
1ka1a_PU7_220-283
CI=3.34


[284-334]:
1ka1a_PU7_284-334
CI=2.75


[335-354 ]:
1ka1a_PU7_335-354
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU8_1-23
CI=0.00


[24-45]:
1ka1a_PU8_24-45
CI=1.46


[46-72]:
1ka1a_PU8_46-72
CI=0.47


[73-88]:
1ka1a_PU8_73-88
CI=0.11


[89-105]:
1ka1a_PU8_89-105
CI=0.00


[106-129]:
1ka1a_PU8_106-129
CI=0.31


[130-174]:
1ka1a_PU8_130-174
CI=3.77


[175-193]:
1ka1a_PU8_175-193
CI=1.64


[194-219]:
1ka1a_PU8_194-219
CI=2.78


[220-236]:
1ka1a_PU8_220-236
CI=0.11


[237-255]:
1ka1a_PU8_237-255
CI=0.00


[256-283]:
1ka1a_PU8_256-283
CI=0.53


[284-334]:
1ka1a_PU8_284-334
CI=2.75


[335-354 ]:
1ka1a_PU8_335-354
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU9_1-23
CI=0.00


[24-45]:
1ka1a_PU9_24-45
CI=1.46


[46-72]:
1ka1a_PU9_46-72
CI=0.47


[73-88]:
1ka1a_PU9_73-88
CI=0.11


[89-105]:
1ka1a_PU9_89-105
CI=0.00


[106-129]:
1ka1a_PU9_106-129
CI=0.31


[130-174]:
1ka1a_PU9_130-174
CI=3.77


[175-193]:
1ka1a_PU9_175-193
CI=1.64


[194-219]:
1ka1a_PU9_194-219
CI=2.78


[220-236]:
1ka1a_PU9_220-236
CI=0.11


[237-255]:
1ka1a_PU9_237-255
CI=0.00


[256-283]:
1ka1a_PU9_256-283
CI=0.53


[284-305]:
1ka1a_PU9_284-305
CI=0.00


[306-334]:
1ka1a_PU9_306-334
CI=3.02


[335-354 ]:
1ka1a_PU9_335-354
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-23]:
1ka1a_PU_1-23
CI=0.00


[24-45]:
1ka1a_PU_24-45
CI=1.46


[46-72]:
1ka1a_PU_46-72
CI=0.47


[73-88]:
1ka1a_PU_73-88
CI=0.11


[89-105]:
1ka1a_PU_89-105
CI=0.00


[106-129]:
1ka1a_PU_106-129
CI=0.31


[130-154]:
1ka1a_PU_130-154
CI=0.30


[155-174]:
1ka1a_PU_155-174
CI=2.81


[175-193]:
1ka1a_PU_175-193
CI=1.64


[194-219]:
1ka1a_PU_194-219
CI=2.78


[220-236]:
1ka1a_PU_220-236
CI=0.11


[237-255]:
1ka1a_PU_237-255
CI=0.00


[256-283]:
1ka1a_PU_256-283
CI=0.53


[284-305]:
1ka1a_PU_284-305
CI=0.00


[306-334]:
1ka1a_PU_306-334
CI=3.02


[335-354 ]:
1ka1a_PU_335-354
CI=0.00