Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU0_1-17
CI=0.00


[18-296 ]:
1kgna_PU0_18-296
CI=2.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU1_1-17
CI=0.00


[18-212]:
1kgna_PU1_18-212
CI=2.35


[213-287]:
1kgna_PU1_213-287
CI=1.20


[288-296 ]:
1kgna_PU1_288-296
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU2_1-17
CI=0.00


[18-212]:
1kgna_PU2_18-212
CI=2.35


[213-230]:
1kgna_PU2_213-230
CI=0.31


[231-287]:
1kgna_PU2_231-287
CI=1.37


[288-296 ]:
1kgna_PU2_288-296
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU3_1-17
CI=0.00


[18-212]:
1kgna_PU3_18-212
CI=2.35


[213-230]:
1kgna_PU3_213-230
CI=0.31


[231-257]:
1kgna_PU3_231-257
CI=0.28


[258-287]:
1kgna_PU3_258-287
CI=1.94


[288-296 ]:
1kgna_PU3_288-296
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU4_1-17
CI=0.00


[18-121]:
1kgna_PU4_18-121
CI=1.76


[122-143]:
1kgna_PU4_122-143
CI=0.25


[144-212]:
1kgna_PU4_144-212
CI=1.22


[213-230]:
1kgna_PU4_213-230
CI=0.31


[231-257]:
1kgna_PU4_231-257
CI=0.28


[258-287]:
1kgna_PU4_258-287
CI=1.94


[288-296 ]:
1kgna_PU4_288-296
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU5_1-17
CI=0.00


[18-121]:
1kgna_PU5_18-121
CI=1.76


[122-143]:
1kgna_PU5_122-143
CI=0.25


[144-171]:
1kgna_PU5_144-171
CI=0.73


[172-199]:
1kgna_PU5_172-199
CI=0.73


[200-212]:
1kgna_PU5_200-212
CI=0.00


[213-230]:
1kgna_PU5_213-230
CI=0.31


[231-257]:
1kgna_PU5_231-257
CI=0.28


[258-287]:
1kgna_PU5_258-287
CI=1.94


[288-296 ]:
1kgna_PU5_288-296
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU6_1-17
CI=0.00


[18-49]:
1kgna_PU6_18-49
CI=0.06


[50-68]:
1kgna_PU6_50-68
CI=0.09


[69-121]:
1kgna_PU6_69-121
CI=2.00


[122-143]:
1kgna_PU6_122-143
CI=0.25


[144-171]:
1kgna_PU6_144-171
CI=0.73


[172-199]:
1kgna_PU6_172-199
CI=0.73


[200-212]:
1kgna_PU6_200-212
CI=0.00


[213-230]:
1kgna_PU6_213-230
CI=0.31


[231-257]:
1kgna_PU6_231-257
CI=0.28


[258-287]:
1kgna_PU6_258-287
CI=1.94


[288-296 ]:
1kgna_PU6_288-296
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU7_1-17
CI=0.00


[18-49]:
1kgna_PU7_18-49
CI=0.06


[50-68]:
1kgna_PU7_50-68
CI=0.09


[69-105]:
1kgna_PU7_69-105
CI=1.37


[106-121]:
1kgna_PU7_106-121
CI=0.00


[122-143]:
1kgna_PU7_122-143
CI=0.25


[144-171]:
1kgna_PU7_144-171
CI=0.73


[172-199]:
1kgna_PU7_172-199
CI=0.73


[200-212]:
1kgna_PU7_200-212
CI=0.00


[213-230]:
1kgna_PU7_213-230
CI=0.31


[231-257]:
1kgna_PU7_231-257
CI=0.28


[258-287]:
1kgna_PU7_258-287
CI=1.94


[288-296 ]:
1kgna_PU7_288-296
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kgna_PU_1-17
CI=0.00


[18-49]:
1kgna_PU_18-49
CI=0.06


[50-68]:
1kgna_PU_50-68
CI=0.09


[69-89]:
1kgna_PU_69-89
CI=0.26


[90-105]:
1kgna_PU_90-105
CI=0.12


[106-121]:
1kgna_PU_106-121
CI=0.00


[122-143]:
1kgna_PU_122-143
CI=0.25


[144-171]:
1kgna_PU_144-171
CI=0.73


[172-199]:
1kgna_PU_172-199
CI=0.73


[200-212]:
1kgna_PU_200-212
CI=0.00


[213-230]:
1kgna_PU_213-230
CI=0.31


[231-257]:
1kgna_PU_231-257
CI=0.28


[258-287]:
1kgna_PU_258-287
CI=1.94


[288-296 ]:
1kgna_PU_288-296
CI=0.00