Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1khia_PU0_1-76
CI=4.69


[77-147 ]:
1khia_PU0_77-147
CI=4.17


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1khia_PU1_1-16
CI=0.00


[17-57]:
1khia_PU1_17-57
CI=4.49


[58-76]:
1khia_PU1_58-76
CI=1.58


[77-147 ]:
1khia_PU1_77-147
CI=4.17


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1khia_PU2_1-16
CI=0.00


[17-57]:
1khia_PU2_17-57
CI=4.49


[58-76]:
1khia_PU2_58-76
CI=1.58


[77-106]:
1khia_PU2_77-106
CI=3.11


[107-126]:
1khia_PU2_107-126
CI=0.37


[127-147 ]:
1khia_PU2_127-147
CI=2.34


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1khia_PU_1-16
CI=0.00


[17-33]:
1khia_PU_17-33
CI=1.76


[34-57]:
1khia_PU_34-57
CI=2.35


[58-76]:
1khia_PU_58-76
CI=1.58


[77-106]:
1khia_PU_77-106
CI=3.11


[107-126]:
1khia_PU_107-126
CI=0.37


[127-147 ]:
1khia_PU_127-147
CI=2.34