Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1khya_PU0_1-73
CI=2.23


[74-131 ]:
1khya_PU0_74-131
CI=1.90


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1khya_PU1_1-31
CI=1.21


[32-63]:
1khya_PU1_32-63
CI=0.95


[64-73]:
1khya_PU1_64-73
CI=0.00


[74-131 ]:
1khya_PU1_74-131
CI=1.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1khya_PU2_1-31
CI=1.21


[32-63]:
1khya_PU2_32-63
CI=0.95


[64-73]:
1khya_PU2_64-73
CI=0.00


[74-107]:
1khya_PU2_74-107
CI=1.98


[108-131 ]:
1khya_PU2_108-131
CI=0.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1khya_PU_1-31
CI=1.21


[32-63]:
1khya_PU_32-63
CI=0.95


[64-73]:
1khya_PU_64-73
CI=0.00


[74-91]:
1khya_PU_74-91
CI=0.00


[92-107]:
1khya_PU_92-107
CI=0.00


[108-131 ]:
1khya_PU_108-131
CI=0.08