Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-61]:
1klla_PU0_1-61
CI=2.43


[62-125 ]:
1klla_PU0_62-125
CI=3.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-61]:
1klla_PU1_1-61
CI=2.43


[62-77]:
1klla_PU1_62-77
CI=0.00


[78-94]:
1klla_PU1_78-94
CI=0.42


[95-125 ]:
1klla_PU1_95-125
CI=3.50


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1klla_PU_1-16
CI=0.00


[17-44]:
1klla_PU_17-44
CI=1.46


[45-61]:
1klla_PU_45-61
CI=0.21


[62-77]:
1klla_PU_62-77
CI=0.00


[78-94]:
1klla_PU_78-94
CI=0.42


[95-125 ]:
1klla_PU_95-125
CI=3.50