Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1knga_PU0_1-127
CI=5.01


[128-144 ]:
1knga_PU0_128-144
CI=0.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-32]:
1knga_PU1_1-32
CI=1.83


[33-95]:
1knga_PU1_33-95
CI=4.06


[96-127]:
1knga_PU1_96-127
CI=1.97


[128-144 ]:
1knga_PU1_128-144
CI=0.10


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1knga_PU2_1-32
CI=1.83


[33-68]:
1knga_PU2_33-68
CI=2.06


[69-95]:
1knga_PU2_69-95
CI=1.11


[96-127]:
1knga_PU2_96-127
CI=1.97


[128-144 ]:
1knga_PU2_128-144
CI=0.10


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1knga_PU_1-32
CI=1.83


[33-51]:
1knga_PU_33-51
CI=0.29


[52-68]:
1knga_PU_52-68
CI=0.53


[69-95]:
1knga_PU_69-95
CI=1.11


[96-127]:
1knga_PU_96-127
CI=1.97


[128-144 ]:
1knga_PU_128-144
CI=0.10