Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1knma_PU0_1-41
CI=2.98


[42-97]:
1knma_PU0_42-97
CI=4.25


[98-129 ]:
1knma_PU0_98-129
CI=2.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1knma_PU1_1-41
CI=2.98


[42-81]:
1knma_PU1_42-81
CI=3.81


[82-97]:
1knma_PU1_82-97
CI=1.85


[98-129 ]:
1knma_PU1_98-129
CI=2.91


Level 2
PU
Molecule needs Java 1.4 Structure


[1-41]:
1knma_PU2_1-41
CI=2.98


[42-60]:
1knma_PU2_42-60
CI=2.53


[61-81]:
1knma_PU2_61-81
CI=1.78


[82-97]:
1knma_PU2_82-97
CI=1.85


[98-129 ]:
1knma_PU2_98-129
CI=2.91


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1knma_PU_1-17
CI=0.99


[18-41]:
1knma_PU_18-41
CI=1.94


[42-60]:
1knma_PU_42-60
CI=2.53


[61-81]:
1knma_PU_61-81
CI=1.78


[82-97]:
1knma_PU_82-97
CI=1.85


[98-129 ]:
1knma_PU_98-129
CI=2.91