Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-55]:
1kp6a_PU0_1-55
CI=4.74


[56-79 ]:
1kp6a_PU0_56-79
CI=0.61


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-26]:
1kp6a_PU_1-26
CI=1.16


[27-55]:
1kp6a_PU_27-55
CI=2.79


[56-79 ]:
1kp6a_PU_56-79
CI=0.61