Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kpf0_PU0_1-18
CI=0.71


[19-111 ]:
1kpf0_PU0_19-111
CI=3.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kpf0_PU1_1-18
CI=0.71


[19-42]:
1kpf0_PU1_19-42
CI=2.52


[43-60]:
1kpf0_PU1_43-60
CI=0.20


[61-111 ]:
1kpf0_PU1_61-111
CI=1.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kpf0_PU2_1-18
CI=0.71


[19-42]:
1kpf0_PU2_19-42
CI=2.52


[43-60]:
1kpf0_PU2_43-60
CI=0.20


[61-77]:
1kpf0_PU2_61-77
CI=0.00


[78-111 ]:
1kpf0_PU2_78-111
CI=1.74


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1kpf0_PU_1-18
CI=0.71


[19-42]:
1kpf0_PU_19-42
CI=2.52


[43-60]:
1kpf0_PU_43-60
CI=0.20


[61-77]:
1kpf0_PU_61-77
CI=0.00


[78-95]:
1kpf0_PU_78-95
CI=0.51


[96-111 ]:
1kpf0_PU_96-111
CI=0.00