Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-132]:
1kpga_PU0_1-132
CI=3.71


[133-276 ]:
1kpga_PU0_133-276
CI=2.71


Level 1
PU
Molecule needs Java 1.4 Structure


[1-132]:
1kpga_PU1_1-132
CI=3.71


[133-231]:
1kpga_PU1_133-231
CI=1.44


[232-251]:
1kpga_PU1_232-251
CI=0.64


[252-276 ]:
1kpga_PU1_252-276
CI=0.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-132]:
1kpga_PU2_1-132
CI=3.71


[133-215]:
1kpga_PU2_133-215
CI=1.71


[216-231]:
1kpga_PU2_216-231
CI=0.00


[232-251]:
1kpga_PU2_232-251
CI=0.64


[252-276 ]:
1kpga_PU2_252-276
CI=0.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-132]:
1kpga_PU3_1-132
CI=3.71


[133-161]:
1kpga_PU3_133-161
CI=0.39


[162-197]:
1kpga_PU3_162-197
CI=0.89


[198-215]:
1kpga_PU3_198-215
CI=0.30


[216-231]:
1kpga_PU3_216-231
CI=0.00


[232-251]:
1kpga_PU3_232-251
CI=0.64


[252-276 ]:
1kpga_PU3_252-276
CI=0.15


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kpga_PU4_1-16
CI=0.00


[17-53]:
1kpga_PU4_17-53
CI=1.69


[54-132]:
1kpga_PU4_54-132
CI=3.83


[133-161]:
1kpga_PU4_133-161
CI=0.39


[162-197]:
1kpga_PU4_162-197
CI=0.89


[198-215]:
1kpga_PU4_198-215
CI=0.30


[216-231]:
1kpga_PU4_216-231
CI=0.00


[232-251]:
1kpga_PU4_232-251
CI=0.64


[252-276 ]:
1kpga_PU4_252-276
CI=0.15


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kpga_PU5_1-16
CI=0.00


[17-53]:
1kpga_PU5_17-53
CI=1.69


[54-132]:
1kpga_PU5_54-132
CI=3.83


[133-161]:
1kpga_PU5_133-161
CI=0.39


[162-178]:
1kpga_PU5_162-178
CI=0.65


[179-197]:
1kpga_PU5_179-197
CI=0.57


[198-215]:
1kpga_PU5_198-215
CI=0.30


[216-231]:
1kpga_PU5_216-231
CI=0.00


[232-251]:
1kpga_PU5_232-251
CI=0.64


[252-276 ]:
1kpga_PU5_252-276
CI=0.15


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kpga_PU6_1-16
CI=0.00


[17-33]:
1kpga_PU6_17-33
CI=0.33


[34-53]:
1kpga_PU6_34-53
CI=1.49


[54-132]:
1kpga_PU6_54-132
CI=3.83


[133-161]:
1kpga_PU6_133-161
CI=0.39


[162-178]:
1kpga_PU6_162-178
CI=0.65


[179-197]:
1kpga_PU6_179-197
CI=0.57


[198-215]:
1kpga_PU6_198-215
CI=0.30


[216-231]:
1kpga_PU6_216-231
CI=0.00


[232-251]:
1kpga_PU6_232-251
CI=0.64


[252-276 ]:
1kpga_PU6_252-276
CI=0.15


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kpga_PU7_1-16
CI=0.00


[17-33]:
1kpga_PU7_17-33
CI=0.33


[34-53]:
1kpga_PU7_34-53
CI=1.49


[54-85]:
1kpga_PU7_54-85
CI=1.96


[86-121]:
1kpga_PU7_86-121
CI=1.69


[122-132]:
1kpga_PU7_122-132
CI=0.00


[133-161]:
1kpga_PU7_133-161
CI=0.39


[162-178]:
1kpga_PU7_162-178
CI=0.65


[179-197]:
1kpga_PU7_179-197
CI=0.57


[198-215]:
1kpga_PU7_198-215
CI=0.30


[216-231]:
1kpga_PU7_216-231
CI=0.00


[232-251]:
1kpga_PU7_232-251
CI=0.64


[252-276 ]:
1kpga_PU7_252-276
CI=0.15


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1kpga_PU_1-16
CI=0.00


[17-33]:
1kpga_PU_17-33
CI=0.33


[34-53]:
1kpga_PU_34-53
CI=1.49


[54-85]:
1kpga_PU_54-85
CI=1.96


[86-105]:
1kpga_PU_86-105
CI=0.18


[106-121]:
1kpga_PU_106-121
CI=0.00


[122-132]:
1kpga_PU_122-132
CI=0.00


[133-161]:
1kpga_PU_133-161
CI=0.39


[162-178]:
1kpga_PU_162-178
CI=0.65


[179-197]:
1kpga_PU_179-197
CI=0.57


[198-215]:
1kpga_PU_198-215
CI=0.30


[216-231]:
1kpga_PU_216-231
CI=0.00


[232-251]:
1kpga_PU_232-251
CI=0.64


[252-276 ]:
1kpga_PU_252-276
CI=0.15