Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1kpta_PU0_1-20
CI=0.00


[21-68]:
1kpta_PU0_21-68
CI=4.15


[69-105 ]:
1kpta_PU0_69-105
CI=2.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1kpta_PU1_1-20
CI=0.00


[21-68]:
1kpta_PU1_21-68
CI=4.15


[69-85]:
1kpta_PU1_69-85
CI=1.08


[86-105 ]:
1kpta_PU1_86-105
CI=0.74


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1kpta_PU_1-20
CI=0.00


[21-37]:
1kpta_PU_21-37
CI=0.10


[38-68]:
1kpta_PU_38-68
CI=1.76


[69-85]:
1kpta_PU_69-85
CI=1.08


[86-105 ]:
1kpta_PU_86-105
CI=0.74