Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-249]:
1kq3a_PU0_1-249
CI=4.81


[250-364 ]:
1kq3a_PU0_250-364
CI=2.76


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU1_1-18
CI=0.00


[19-115]:
1kq3a_PU1_19-115
CI=3.51


[116-249]:
1kq3a_PU1_116-249
CI=4.00


[250-364 ]:
1kq3a_PU1_250-364
CI=2.76


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU2_1-18
CI=0.00


[19-115]:
1kq3a_PU2_19-115
CI=3.51


[116-249]:
1kq3a_PU2_116-249
CI=4.00


[250-286]:
1kq3a_PU2_250-286
CI=1.48


[287-304]:
1kq3a_PU2_287-304
CI=0.10


[305-364 ]:
1kq3a_PU2_305-364
CI=1.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU3_1-18
CI=0.00


[19-115]:
1kq3a_PU3_19-115
CI=3.51


[116-249]:
1kq3a_PU3_116-249
CI=4.00


[250-286]:
1kq3a_PU3_250-286
CI=1.48


[287-304]:
1kq3a_PU3_287-304
CI=0.10


[305-321]:
1kq3a_PU3_305-321
CI=0.53


[322-348]:
1kq3a_PU3_322-348
CI=1.20


[349-364 ]:
1kq3a_PU3_349-364
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU4_1-18
CI=0.00


[19-115]:
1kq3a_PU4_19-115
CI=3.51


[116-206]:
1kq3a_PU4_116-206
CI=2.06


[207-232]:
1kq3a_PU4_207-232
CI=1.88


[233-249]:
1kq3a_PU4_233-249
CI=0.11


[250-286]:
1kq3a_PU4_250-286
CI=1.48


[287-304]:
1kq3a_PU4_287-304
CI=0.10


[305-321]:
1kq3a_PU4_305-321
CI=0.53


[322-348]:
1kq3a_PU4_322-348
CI=1.20


[349-364 ]:
1kq3a_PU4_349-364
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU5_1-18
CI=0.00


[19-115]:
1kq3a_PU5_19-115
CI=3.51


[116-171]:
1kq3a_PU5_116-171
CI=2.24


[172-206]:
1kq3a_PU5_172-206
CI=1.45


[207-232]:
1kq3a_PU5_207-232
CI=1.88


[233-249]:
1kq3a_PU5_233-249
CI=0.11


[250-286]:
1kq3a_PU5_250-286
CI=1.48


[287-304]:
1kq3a_PU5_287-304
CI=0.10


[305-321]:
1kq3a_PU5_305-321
CI=0.53


[322-348]:
1kq3a_PU5_322-348
CI=1.20


[349-364 ]:
1kq3a_PU5_349-364
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU6_1-18
CI=0.00


[19-115]:
1kq3a_PU6_19-115
CI=3.51


[116-151]:
1kq3a_PU6_116-151
CI=1.97


[152-171]:
1kq3a_PU6_152-171
CI=0.00


[172-206]:
1kq3a_PU6_172-206
CI=1.45


[207-232]:
1kq3a_PU6_207-232
CI=1.88


[233-249]:
1kq3a_PU6_233-249
CI=0.11


[250-286]:
1kq3a_PU6_250-286
CI=1.48


[287-304]:
1kq3a_PU6_287-304
CI=0.10


[305-321]:
1kq3a_PU6_305-321
CI=0.53


[322-348]:
1kq3a_PU6_322-348
CI=1.20


[349-364 ]:
1kq3a_PU6_349-364
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU7_1-18
CI=0.00


[19-37]:
1kq3a_PU7_19-37
CI=0.19


[38-53]:
1kq3a_PU7_38-53
CI=0.34


[54-115]:
1kq3a_PU7_54-115
CI=2.36


[116-151]:
1kq3a_PU7_116-151
CI=1.97


[152-171]:
1kq3a_PU7_152-171
CI=0.00


[172-206]:
1kq3a_PU7_172-206
CI=1.45


[207-232]:
1kq3a_PU7_207-232
CI=1.88


[233-249]:
1kq3a_PU7_233-249
CI=0.11


[250-286]:
1kq3a_PU7_250-286
CI=1.48


[287-304]:
1kq3a_PU7_287-304
CI=0.10


[305-321]:
1kq3a_PU7_305-321
CI=0.53


[322-348]:
1kq3a_PU7_322-348
CI=1.20


[349-364 ]:
1kq3a_PU7_349-364
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1kq3a_PU_1-18
CI=0.00


[19-37]:
1kq3a_PU_19-37
CI=0.19


[38-53]:
1kq3a_PU_38-53
CI=0.34


[54-84]:
1kq3a_PU_54-84
CI=0.12


[85-115]:
1kq3a_PU_85-115
CI=3.25


[116-151]:
1kq3a_PU_116-151
CI=1.97


[152-171]:
1kq3a_PU_152-171
CI=0.00


[172-206]:
1kq3a_PU_172-206
CI=1.45


[207-232]:
1kq3a_PU_207-232
CI=1.88


[233-249]:
1kq3a_PU_233-249
CI=0.11


[250-286]:
1kq3a_PU_250-286
CI=1.48


[287-304]:
1kq3a_PU_287-304
CI=0.10


[305-321]:
1kq3a_PU_305-321
CI=0.53


[322-348]:
1kq3a_PU_322-348
CI=1.20


[349-364 ]:
1kq3a_PU_349-364
CI=0.00