Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1kq6a_PU0_1-52
CI=2.78


[53-68]:
1kq6a_PU0_53-68
CI=2.18


[69-136 ]:
1kq6a_PU0_69-136
CI=0.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1kq6a_PU1_1-52
CI=2.78


[53-68]:
1kq6a_PU1_53-68
CI=2.18


[69-116]:
1kq6a_PU1_69-116
CI=0.79


[117-136 ]:
1kq6a_PU1_117-136
CI=0.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-52]:
1kq6a_PU2_1-52
CI=2.78


[53-68]:
1kq6a_PU2_53-68
CI=2.18


[69-98]:
1kq6a_PU2_69-98
CI=0.93


[99-116]:
1kq6a_PU2_99-116
CI=0.20


[117-136 ]:
1kq6a_PU2_117-136
CI=0.09


Level 3
PU
Molecule needs Java 1.4 Structure


[1-34]:
1kq6a_PU3_1-34
CI=2.59


[35-52]:
1kq6a_PU3_35-52
CI=0.00


[53-68]:
1kq6a_PU3_53-68
CI=2.18


[69-98]:
1kq6a_PU3_69-98
CI=0.93


[99-116]:
1kq6a_PU3_99-116
CI=0.20


[117-136 ]:
1kq6a_PU3_117-136
CI=0.09


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kq6a_PU_1-17
CI=0.00


[18-34]:
1kq6a_PU_18-34
CI=0.10


[35-52]:
1kq6a_PU_35-52
CI=0.00


[53-68]:
1kq6a_PU_53-68
CI=2.18


[69-98]:
1kq6a_PU_69-98
CI=0.93


[99-116]:
1kq6a_PU_99-116
CI=0.20


[117-136 ]:
1kq6a_PU_117-136
CI=0.09