Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU0_1-16
CI=0.22


[17-223]:
1kqpa_PU0_17-223
CI=3.49


[224-271 ]:
1kqpa_PU0_224-271
CI=0.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU1_1-16
CI=0.22


[17-223]:
1kqpa_PU1_17-223
CI=3.49


[224-252]:
1kqpa_PU1_224-252
CI=0.84


[253-271 ]:
1kqpa_PU1_253-271
CI=0.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU2_1-16
CI=0.22


[17-108]:
1kqpa_PU2_17-108
CI=2.98


[109-126]:
1kqpa_PU2_109-126
CI=0.71


[127-223]:
1kqpa_PU2_127-223
CI=2.29


[224-252]:
1kqpa_PU2_224-252
CI=0.84


[253-271 ]:
1kqpa_PU2_253-271
CI=0.38


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU3_1-16
CI=0.22


[17-108]:
1kqpa_PU3_17-108
CI=2.98


[109-126]:
1kqpa_PU3_109-126
CI=0.71


[127-182]:
1kqpa_PU3_127-182
CI=2.39


[183-206]:
1kqpa_PU3_183-206
CI=0.23


[207-223]:
1kqpa_PU3_207-223
CI=1.74


[224-252]:
1kqpa_PU3_224-252
CI=0.84


[253-271 ]:
1kqpa_PU3_253-271
CI=0.38


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU4_1-16
CI=0.22


[17-38]:
1kqpa_PU4_17-38
CI=0.00


[39-108]:
1kqpa_PU4_39-108
CI=3.44


[109-126]:
1kqpa_PU4_109-126
CI=0.71


[127-182]:
1kqpa_PU4_127-182
CI=2.39


[183-206]:
1kqpa_PU4_183-206
CI=0.23


[207-223]:
1kqpa_PU4_207-223
CI=1.74


[224-252]:
1kqpa_PU4_224-252
CI=0.84


[253-271 ]:
1kqpa_PU4_253-271
CI=0.38


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU5_1-16
CI=0.22


[17-38]:
1kqpa_PU5_17-38
CI=0.00


[39-108]:
1kqpa_PU5_39-108
CI=3.44


[109-126]:
1kqpa_PU5_109-126
CI=0.71


[127-154]:
1kqpa_PU5_127-154
CI=0.34


[155-182]:
1kqpa_PU5_155-182
CI=2.36


[183-206]:
1kqpa_PU5_183-206
CI=0.23


[207-223]:
1kqpa_PU5_207-223
CI=1.74


[224-252]:
1kqpa_PU5_224-252
CI=0.84


[253-271 ]:
1kqpa_PU5_253-271
CI=0.38


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU6_1-16
CI=0.22


[17-38]:
1kqpa_PU6_17-38
CI=0.00


[39-55]:
1kqpa_PU6_39-55
CI=0.75


[56-71]:
1kqpa_PU6_56-71
CI=0.23


[72-108]:
1kqpa_PU6_72-108
CI=2.27


[109-126]:
1kqpa_PU6_109-126
CI=0.71


[127-154]:
1kqpa_PU6_127-154
CI=0.34


[155-182]:
1kqpa_PU6_155-182
CI=2.36


[183-206]:
1kqpa_PU6_183-206
CI=0.23


[207-223]:
1kqpa_PU6_207-223
CI=1.74


[224-252]:
1kqpa_PU6_224-252
CI=0.84


[253-271 ]:
1kqpa_PU6_253-271
CI=0.38


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-16]:
1kqpa_PU_1-16
CI=0.22


[17-38]:
1kqpa_PU_17-38
CI=0.00


[39-55]:
1kqpa_PU_39-55
CI=0.75


[56-71]:
1kqpa_PU_56-71
CI=0.23


[72-90]:
1kqpa_PU_72-90
CI=0.18


[91-108]:
1kqpa_PU_91-108
CI=0.10


[109-126]:
1kqpa_PU_109-126
CI=0.71


[127-154]:
1kqpa_PU_127-154
CI=0.34


[155-182]:
1kqpa_PU_155-182
CI=2.36


[183-206]:
1kqpa_PU_183-206
CI=0.23


[207-223]:
1kqpa_PU_207-223
CI=1.74


[224-252]:
1kqpa_PU_224-252
CI=0.84


[253-271 ]:
1kqpa_PU_253-271
CI=0.38