Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1kqwa_PU0_1-65
CI=2.94


[66-110]:
1kqwa_PU0_66-110
CI=4.02


[111-134 ]:
1kqwa_PU0_111-134
CI=2.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1kqwa_PU1_1-37
CI=0.56


[38-65]:
1kqwa_PU1_38-65
CI=3.46


[66-110]:
1kqwa_PU1_66-110
CI=4.02


[111-134 ]:
1kqwa_PU1_111-134
CI=2.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1kqwa_PU2_1-21
CI=0.00


[22-37]:
1kqwa_PU2_22-37
CI=0.00


[38-65]:
1kqwa_PU2_38-65
CI=3.46


[66-110]:
1kqwa_PU2_66-110
CI=4.02


[111-134 ]:
1kqwa_PU2_111-134
CI=2.22


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1kqwa_PU_1-21
CI=0.00


[22-37]:
1kqwa_PU_22-37
CI=0.00


[38-65]:
1kqwa_PU_38-65
CI=3.46


[66-88]:
1kqwa_PU_66-88
CI=2.64


[89-110]:
1kqwa_PU_89-110
CI=2.30


[111-134 ]:
1kqwa_PU_111-134
CI=2.22