Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1kr4a_PU0_1-39
CI=0.96


[40-55]:
1kr4a_PU0_40-55
CI=2.21


[56-107 ]:
1kr4a_PU0_56-107
CI=0.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-39]:
1kr4a_PU1_1-39
CI=0.96


[40-55]:
1kr4a_PU1_40-55
CI=2.21


[56-91]:
1kr4a_PU1_56-91
CI=0.10


[92-107 ]:
1kr4a_PU1_92-107
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-39]:
1kr4a_PU2_1-39
CI=0.96


[40-55]:
1kr4a_PU2_40-55
CI=2.21


[56-72]:
1kr4a_PU2_56-72
CI=0.00


[73-91]:
1kr4a_PU2_73-91
CI=0.09


[92-107 ]:
1kr4a_PU2_92-107
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1kr4a_PU_1-19
CI=0.20


[20-39]:
1kr4a_PU_20-39
CI=0.82


[40-55]:
1kr4a_PU_40-55
CI=2.21


[56-72]:
1kr4a_PU_56-72
CI=0.00


[73-91]:
1kr4a_PU_73-91
CI=0.09


[92-107 ]:
1kr4a_PU_92-107
CI=0.00