Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU0_1-177
CI=4.31


[178-349]:
1ktaa_PU0_178-349
CI=4.07


[350-365 ]:
1ktaa_PU0_350-365
CI=0.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU1_1-177
CI=4.31


[178-201]:
1ktaa_PU1_178-201
CI=0.23


[202-222]:
1ktaa_PU1_202-222
CI=0.00


[223-349]:
1ktaa_PU1_223-349
CI=3.51


[350-365 ]:
1ktaa_PU1_350-365
CI=0.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU2_1-177
CI=4.31


[178-201]:
1ktaa_PU2_178-201
CI=0.23


[202-222]:
1ktaa_PU2_202-222
CI=0.00


[223-316]:
1ktaa_PU2_223-316
CI=3.40


[317-349]:
1ktaa_PU2_317-349
CI=1.39


[350-365 ]:
1ktaa_PU2_350-365
CI=0.58


Level 3
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU3_1-177
CI=4.31


[178-201]:
1ktaa_PU3_178-201
CI=0.23


[202-222]:
1ktaa_PU3_202-222
CI=0.00


[223-316]:
1ktaa_PU3_223-316
CI=3.40


[317-333]:
1ktaa_PU3_317-333
CI=1.54


[334-349]:
1ktaa_PU3_334-349
CI=0.00


[350-365 ]:
1ktaa_PU3_350-365
CI=0.58


Level 4
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU4_1-177
CI=4.31


[178-201]:
1ktaa_PU4_178-201
CI=0.23


[202-222]:
1ktaa_PU4_202-222
CI=0.00


[223-271]:
1ktaa_PU4_223-271
CI=2.47


[272-287]:
1ktaa_PU4_272-287
CI=0.35


[288-316]:
1ktaa_PU4_288-316
CI=0.13


[317-333]:
1ktaa_PU4_317-333
CI=1.54


[334-349]:
1ktaa_PU4_334-349
CI=0.00


[350-365 ]:
1ktaa_PU4_350-365
CI=0.58


Level 5
PU
Molecule needs Java 1.4 Structure


[1-177]:
1ktaa_PU5_1-177
CI=4.31


[178-201]:
1ktaa_PU5_178-201
CI=0.23


[202-222]:
1ktaa_PU5_202-222
CI=0.00


[223-240]:
1ktaa_PU5_223-240
CI=2.29


[241-271]:
1ktaa_PU5_241-271
CI=1.84


[272-287]:
1ktaa_PU5_272-287
CI=0.35


[288-316]:
1ktaa_PU5_288-316
CI=0.13


[317-333]:
1ktaa_PU5_317-333
CI=1.54


[334-349]:
1ktaa_PU5_334-349
CI=0.00


[350-365 ]:
1ktaa_PU5_350-365
CI=0.58


Level 6
PU
Molecule needs Java 1.4 Structure


[1-59]:
1ktaa_PU6_1-59
CI=2.77


[60-165]:
1ktaa_PU6_60-165
CI=3.27


[166-177]:
1ktaa_PU6_166-177
CI=0.00


[178-201]:
1ktaa_PU6_178-201
CI=0.23


[202-222]:
1ktaa_PU6_202-222
CI=0.00


[223-240]:
1ktaa_PU6_223-240
CI=2.29


[241-271]:
1ktaa_PU6_241-271
CI=1.84


[272-287]:
1ktaa_PU6_272-287
CI=0.35


[288-316]:
1ktaa_PU6_288-316
CI=0.13


[317-333]:
1ktaa_PU6_317-333
CI=1.54


[334-349]:
1ktaa_PU6_334-349
CI=0.00


[350-365 ]:
1ktaa_PU6_350-365
CI=0.58


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ktaa_PU7_1-18
CI=0.00


[19-35]:
1ktaa_PU7_19-35
CI=0.43


[36-59]:
1ktaa_PU7_36-59
CI=2.36


[60-165]:
1ktaa_PU7_60-165
CI=3.27


[166-177]:
1ktaa_PU7_166-177
CI=0.00


[178-201]:
1ktaa_PU7_178-201
CI=0.23


[202-222]:
1ktaa_PU7_202-222
CI=0.00


[223-240]:
1ktaa_PU7_223-240
CI=2.29


[241-271]:
1ktaa_PU7_241-271
CI=1.84


[272-287]:
1ktaa_PU7_272-287
CI=0.35


[288-316]:
1ktaa_PU7_288-316
CI=0.13


[317-333]:
1ktaa_PU7_317-333
CI=1.54


[334-349]:
1ktaa_PU7_334-349
CI=0.00


[350-365 ]:
1ktaa_PU7_350-365
CI=0.58


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ktaa_PU_1-18
CI=0.00


[19-35]:
1ktaa_PU_19-35
CI=0.43


[36-59]:
1ktaa_PU_36-59
CI=2.36


[60-75]:
1ktaa_PU_60-75
CI=0.23


[76-144]:
1ktaa_PU_76-144
CI=2.23


[145-165]:
1ktaa_PU_145-165
CI=2.24


[166-177]:
1ktaa_PU_166-177
CI=0.00


[178-201]:
1ktaa_PU_178-201
CI=0.23


[202-222]:
1ktaa_PU_202-222
CI=0.00


[223-240]:
1ktaa_PU_223-240
CI=2.29


[241-271]:
1ktaa_PU_241-271
CI=1.84


[272-287]:
1ktaa_PU_272-287
CI=0.35


[288-316]:
1ktaa_PU_288-316
CI=0.13


[317-333]:
1ktaa_PU_317-333
CI=1.54


[334-349]:
1ktaa_PU_334-349
CI=0.00


[350-365 ]:
1ktaa_PU_350-365
CI=0.58