Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-108]:
1ktga_PU0_1-108
CI=4.81


[109-137 ]:
1ktga_PU0_109-137
CI=1.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1ktga_PU1_1-65
CI=3.18


[66-87]:
1ktga_PU1_66-87
CI=2.40


[88-108]:
1ktga_PU1_88-108
CI=0.08


[109-137 ]:
1ktga_PU1_109-137
CI=1.21


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-33]:
1ktga_PU_1-33
CI=2.09


[34-65]:
1ktga_PU_34-65
CI=1.71


[66-87]:
1ktga_PU_66-87
CI=2.40


[88-108]:
1ktga_PU_88-108
CI=0.08


[109-137 ]:
1ktga_PU_109-137
CI=1.21