Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Final level 0

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ku3a_PU_1-17
CI=0.31


[18-46]:
1ku3a_PU_18-46
CI=2.08


[47-61 ]:
1ku3a_PU_47-61
CI=0.00