Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kvea_PU0_1-17
CI=0.00


[18-63 ]:
1kvea_PU0_18-63
CI=2.32


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kvea_PU_1-17
CI=0.00


[18-38]:
1kvea_PU_18-38
CI=2.92


[39-63 ]:
1kvea_PU_39-63
CI=1.12