Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-143]:
1kw3b_PU0_1-143
CI=4.33


[144-288 ]:
1kw3b_PU0_144-288
CI=5.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1kw3b_PU1_1-65
CI=3.77


[66-119]:
1kw3b_PU1_66-119
CI=2.89


[120-143]:
1kw3b_PU1_120-143
CI=0.16


[144-288 ]:
1kw3b_PU1_144-288
CI=5.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1kw3b_PU2_1-65
CI=3.77


[66-119]:
1kw3b_PU2_66-119
CI=2.89


[120-143]:
1kw3b_PU2_120-143
CI=0.16


[144-213]:
1kw3b_PU2_144-213
CI=4.02


[214-288 ]:
1kw3b_PU2_214-288
CI=3.71


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU3_1-18
CI=0.10


[19-52]:
1kw3b_PU3_19-52
CI=2.71


[53-65]:
1kw3b_PU3_53-65
CI=0.00


[66-119]:
1kw3b_PU3_66-119
CI=2.89


[120-143]:
1kw3b_PU3_120-143
CI=0.16


[144-213]:
1kw3b_PU3_144-213
CI=4.02


[214-288 ]:
1kw3b_PU3_214-288
CI=3.71


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU4_1-18
CI=0.10


[19-52]:
1kw3b_PU4_19-52
CI=2.71


[53-65]:
1kw3b_PU4_53-65
CI=0.00


[66-119]:
1kw3b_PU4_66-119
CI=2.89


[120-143]:
1kw3b_PU4_120-143
CI=0.16


[144-213]:
1kw3b_PU4_144-213
CI=4.02


[214-233]:
1kw3b_PU4_214-233
CI=0.28


[234-288 ]:
1kw3b_PU4_234-288
CI=3.82


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU5_1-18
CI=0.10


[19-52]:
1kw3b_PU5_19-52
CI=2.71


[53-65]:
1kw3b_PU5_53-65
CI=0.00


[66-85]:
1kw3b_PU5_66-85
CI=0.27


[86-119]:
1kw3b_PU5_86-119
CI=2.86


[120-143]:
1kw3b_PU5_120-143
CI=0.16


[144-213]:
1kw3b_PU5_144-213
CI=4.02


[214-233]:
1kw3b_PU5_214-233
CI=0.28


[234-288 ]:
1kw3b_PU5_234-288
CI=3.82


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU6_1-18
CI=0.10


[19-52]:
1kw3b_PU6_19-52
CI=2.71


[53-65]:
1kw3b_PU6_53-65
CI=0.00


[66-85]:
1kw3b_PU6_66-85
CI=0.27


[86-119]:
1kw3b_PU6_86-119
CI=2.86


[120-143]:
1kw3b_PU6_120-143
CI=0.16


[144-165]:
1kw3b_PU6_144-165
CI=0.25


[166-194]:
1kw3b_PU6_166-194
CI=2.96


[195-213]:
1kw3b_PU6_195-213
CI=0.09


[214-233]:
1kw3b_PU6_214-233
CI=0.28


[234-288 ]:
1kw3b_PU6_234-288
CI=3.82


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU7_1-18
CI=0.10


[19-52]:
1kw3b_PU7_19-52
CI=2.71


[53-65]:
1kw3b_PU7_53-65
CI=0.00


[66-85]:
1kw3b_PU7_66-85
CI=0.27


[86-119]:
1kw3b_PU7_86-119
CI=2.86


[120-143]:
1kw3b_PU7_120-143
CI=0.16


[144-165]:
1kw3b_PU7_144-165
CI=0.25


[166-194]:
1kw3b_PU7_166-194
CI=2.96


[195-213]:
1kw3b_PU7_195-213
CI=0.09


[214-233]:
1kw3b_PU7_214-233
CI=0.28


[234-267]:
1kw3b_PU7_234-267
CI=3.71


[268-288 ]:
1kw3b_PU7_268-288
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU8_1-18
CI=0.10


[19-35]:
1kw3b_PU8_19-35
CI=0.44


[36-52]:
1kw3b_PU8_36-52
CI=2.32


[53-65]:
1kw3b_PU8_53-65
CI=0.00


[66-85]:
1kw3b_PU8_66-85
CI=0.27


[86-119]:
1kw3b_PU8_86-119
CI=2.86


[120-143]:
1kw3b_PU8_120-143
CI=0.16


[144-165]:
1kw3b_PU8_144-165
CI=0.25


[166-194]:
1kw3b_PU8_166-194
CI=2.96


[195-213]:
1kw3b_PU8_195-213
CI=0.09


[214-233]:
1kw3b_PU8_214-233
CI=0.28


[234-267]:
1kw3b_PU8_234-267
CI=3.71


[268-288 ]:
1kw3b_PU8_268-288
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1kw3b_PU_1-18
CI=0.10


[19-35]:
1kw3b_PU_19-35
CI=0.44


[36-52]:
1kw3b_PU_36-52
CI=2.32


[53-65]:
1kw3b_PU_53-65
CI=0.00


[66-85]:
1kw3b_PU_66-85
CI=0.27


[86-119]:
1kw3b_PU_86-119
CI=2.86


[120-143]:
1kw3b_PU_120-143
CI=0.16


[144-165]:
1kw3b_PU_144-165
CI=0.25


[166-194]:
1kw3b_PU_166-194
CI=2.96


[195-213]:
1kw3b_PU_195-213
CI=0.09


[214-233]:
1kw3b_PU_214-233
CI=0.28


[234-250]:
1kw3b_PU_234-250
CI=2.30


[251-267]:
1kw3b_PU_251-267
CI=0.55


[268-288 ]:
1kw3b_PU_268-288
CI=0.00