Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1kx5b_PU0_1-38
CI=0.90


[39-135 ]:
1kx5b_PU0_39-135
CI=0.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1kx5b_PU1_1-38
CI=0.90


[39-99]:
1kx5b_PU1_39-99
CI=0.28


[100-135 ]:
1kx5b_PU1_100-135
CI=1.67


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1kx5b_PU2_1-38
CI=0.90


[39-59]:
1kx5b_PU2_39-59
CI=0.00


[60-99]:
1kx5b_PU2_60-99
CI=0.42


[100-135 ]:
1kx5b_PU2_100-135
CI=1.67


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-22]:
1kx5b_PU_1-22
CI=0.33


[23-38]:
1kx5b_PU_23-38
CI=0.35


[39-59]:
1kx5b_PU_39-59
CI=0.00


[60-99]:
1kx5b_PU_60-99
CI=0.42


[100-135 ]:
1kx5b_PU_100-135
CI=1.67