Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1kxoa_PU0_1-39
CI=0.29


[40-97]:
1kxoa_PU0_40-97
CI=3.98


[98-165 ]:
1kxoa_PU0_98-165
CI=2.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kxoa_PU1_1-17
CI=0.00


[18-39]:
1kxoa_PU1_18-39
CI=0.08


[40-97]:
1kxoa_PU1_40-97
CI=3.98


[98-165 ]:
1kxoa_PU1_98-165
CI=2.15


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kxoa_PU2_1-17
CI=0.00


[18-39]:
1kxoa_PU2_18-39
CI=0.08


[40-72]:
1kxoa_PU2_40-72
CI=3.65


[73-97]:
1kxoa_PU2_73-97
CI=2.44


[98-165 ]:
1kxoa_PU2_98-165
CI=2.15


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kxoa_PU3_1-17
CI=0.00


[18-39]:
1kxoa_PU3_18-39
CI=0.08


[40-72]:
1kxoa_PU3_40-72
CI=3.65


[73-97]:
1kxoa_PU3_73-97
CI=2.44


[98-129]:
1kxoa_PU3_98-129
CI=3.12


[130-165 ]:
1kxoa_PU3_130-165
CI=0.42


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kxoa_PU_1-17
CI=0.00


[18-39]:
1kxoa_PU_18-39
CI=0.08


[40-72]:
1kxoa_PU_40-72
CI=3.65


[73-97]:
1kxoa_PU_73-97
CI=2.44


[98-129]:
1kxoa_PU_98-129
CI=3.12


[130-149]:
1kxoa_PU_130-149
CI=0.00


[150-165 ]:
1kxoa_PU_150-165
CI=0.00