Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-134]:
1kyha_PU0_1-134
CI=4.12


[135-190]:
1kyha_PU0_135-190
CI=3.61


[191-263 ]:
1kyha_PU0_191-263
CI=2.13


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU1_1-17
CI=0.00


[18-134]:
1kyha_PU1_18-134
CI=4.71


[135-190]:
1kyha_PU1_135-190
CI=3.61


[191-263 ]:
1kyha_PU1_191-263
CI=2.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU2_1-17
CI=0.00


[18-73]:
1kyha_PU2_18-73
CI=3.78


[74-134]:
1kyha_PU2_74-134
CI=3.36


[135-190]:
1kyha_PU2_135-190
CI=3.61


[191-263 ]:
1kyha_PU2_191-263
CI=2.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU3_1-17
CI=0.00


[18-73]:
1kyha_PU3_18-73
CI=3.78


[74-134]:
1kyha_PU3_74-134
CI=3.36


[135-190]:
1kyha_PU3_135-190
CI=3.61


[191-212]:
1kyha_PU3_191-212
CI=0.00


[213-228]:
1kyha_PU3_213-228
CI=0.69


[229-263 ]:
1kyha_PU3_229-263
CI=1.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU4_1-17
CI=0.00


[18-73]:
1kyha_PU4_18-73
CI=3.78


[74-134]:
1kyha_PU4_74-134
CI=3.36


[135-156]:
1kyha_PU4_135-156
CI=0.67


[157-190]:
1kyha_PU4_157-190
CI=3.86


[191-212]:
1kyha_PU4_191-212
CI=0.00


[213-228]:
1kyha_PU4_213-228
CI=0.69


[229-263 ]:
1kyha_PU4_229-263
CI=1.13


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU5_1-17
CI=0.00


[18-73]:
1kyha_PU5_18-73
CI=3.78


[74-134]:
1kyha_PU5_74-134
CI=3.36


[135-156]:
1kyha_PU5_135-156
CI=0.67


[157-190]:
1kyha_PU5_157-190
CI=3.86


[191-212]:
1kyha_PU5_191-212
CI=0.00


[213-228]:
1kyha_PU5_213-228
CI=0.69


[229-246]:
1kyha_PU5_229-246
CI=0.19


[247-263 ]:
1kyha_PU5_247-263
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU6_1-17
CI=0.00


[18-48]:
1kyha_PU6_18-48
CI=1.90


[49-73]:
1kyha_PU6_49-73
CI=2.05


[74-134]:
1kyha_PU6_74-134
CI=3.36


[135-156]:
1kyha_PU6_135-156
CI=0.67


[157-190]:
1kyha_PU6_157-190
CI=3.86


[191-212]:
1kyha_PU6_191-212
CI=0.00


[213-228]:
1kyha_PU6_213-228
CI=0.69


[229-246]:
1kyha_PU6_229-246
CI=0.19


[247-263 ]:
1kyha_PU6_247-263
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU7_1-17
CI=0.00


[18-48]:
1kyha_PU7_18-48
CI=1.90


[49-73]:
1kyha_PU7_49-73
CI=2.05


[74-108]:
1kyha_PU7_74-108
CI=1.83


[109-134]:
1kyha_PU7_109-134
CI=1.35


[135-156]:
1kyha_PU7_135-156
CI=0.67


[157-190]:
1kyha_PU7_157-190
CI=3.86


[191-212]:
1kyha_PU7_191-212
CI=0.00


[213-228]:
1kyha_PU7_213-228
CI=0.69


[229-246]:
1kyha_PU7_229-246
CI=0.19


[247-263 ]:
1kyha_PU7_247-263
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1kyha_PU_1-17
CI=0.00


[18-48]:
1kyha_PU_18-48
CI=1.90


[49-73]:
1kyha_PU_49-73
CI=2.05


[74-108]:
1kyha_PU_74-108
CI=1.83


[109-134]:
1kyha_PU_109-134
CI=1.35


[135-156]:
1kyha_PU_135-156
CI=0.67


[157-173]:
1kyha_PU_157-173
CI=0.86


[174-190]:
1kyha_PU_174-190
CI=1.63


[191-212]:
1kyha_PU_191-212
CI=0.00


[213-228]:
1kyha_PU_213-228
CI=0.69


[229-246]:
1kyha_PU_229-246
CI=0.19


[247-263 ]:
1kyha_PU_247-263
CI=0.00