Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1l0ia_PU0_1-39
CI=1.40


[40-77 ]:
1l0ia_PU0_40-77
CI=1.34


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1l0ia_PU1_1-23
CI=0.72


[24-39]:
1l0ia_PU1_24-39
CI=0.80


[40-77 ]:
1l0ia_PU1_40-77
CI=1.34


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1l0ia_PU_1-23
CI=0.72


[24-39]:
1l0ia_PU_24-39
CI=0.80


[40-61]:
1l0ia_PU_40-61
CI=0.59


[62-77 ]:
1l0ia_PU_62-77
CI=0.34