Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l1da_PU0_1-25
CI=0.30


[26-142 ]:
1l1da_PU0_26-142
CI=4.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1l1da_PU1_1-25
CI=0.30


[26-73]:
1l1da_PU1_26-73
CI=2.98


[74-104]:
1l1da_PU1_74-104
CI=3.37


[105-142 ]:
1l1da_PU1_105-142
CI=0.85


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1l1da_PU_1-25
CI=0.30


[26-49]:
1l1da_PU_26-49
CI=0.00


[50-73]:
1l1da_PU_50-73
CI=2.64


[74-104]:
1l1da_PU_74-104
CI=3.37


[105-142 ]:
1l1da_PU_105-142
CI=0.85