Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1l3ka_PU0_1-84
CI=4.44


[85-163 ]:
1l3ka_PU0_85-163
CI=4.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1l3ka_PU1_1-16
CI=0.00


[17-54]:
1l3ka_PU1_17-54
CI=2.84


[55-84]:
1l3ka_PU1_55-84
CI=0.75


[85-163 ]:
1l3ka_PU1_85-163
CI=4.36


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1l3ka_PU_1-16
CI=0.00


[17-54]:
1l3ka_PU_17-54
CI=2.84


[55-84]:
1l3ka_PU_55-84
CI=0.75


[85-111]:
1l3ka_PU_85-111
CI=0.00


[112-136]:
1l3ka_PU_112-136
CI=2.74


[137-163 ]:
1l3ka_PU_137-163
CI=1.04